JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH3TC1_chr4_8194290_8246103	0/0	c0025	4011	2	0	0	2	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0026	4011	2	1	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0027	4011	2	2	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0028	4011	2	0	0	0	0	2	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0029	4011	2	2	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0030	4011	2	0	2	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0031	4011	2	0	2	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0032	4011	2	2	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0033	4011	2	2	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0034	4011	2	2	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0035	4011	2	2	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0036	4011	2	2	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0037	4011	2	0	0	2	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0038	4011	2	2	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0039	4011	2	0	0	0	2	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0040	4011	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0041	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0042	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0043	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0044	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0045	4011	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0046	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0047	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0048	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0049	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0050	4011	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0051	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0052	4011	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0053	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0054	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0055	4011	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0056	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0057	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0058	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0059	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0060	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0061	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0062	4011	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0063	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0064	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0065	4011	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	1/0	c0066	4011	1	0	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0067	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0068	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0069	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0070	4011	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0071	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0072	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0073	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0074	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103