JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH3TC1_chr4_8194290_8246103	0/0	c0075	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0076	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0077	4011	1	0	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0078	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0079	3994	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0080	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0081	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0082	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0083	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0084	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0085	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0086	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0087	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0088	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0089	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0090	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0091	4011	1	1	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0092	4011	1	0	1	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0093	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0094	4011	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC2_chr5_148977150_149068062	0/1	c0001	3867	124	20	27	60	5	11	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0002	3867	68	6	12	42	2	6	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0003	3867	40	22	6	7	2	3	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0004	3867	17	0	8	4	0	5	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0005	3867	11	10	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0006	3867	8	0	0	8	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0007	3867	5	5	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0008	3867	4	0	1	0	0	3	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0009	3867	3	1	2	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0010	3867	3	0	3	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0011	3867	3	0	0	2	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0012	3867	3	3	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	1/0	c0013	3867	3	1	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0014	3867	2	0	1	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0015	3867	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0016	3867	2	0	2	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0017	3867	2	0	2	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0018	3867	2	0	1	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0019	3867	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0020	3867	2	1	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0021	3867	2	1	0	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0022	3867	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0023	3867	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0024	3867	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0025	3867	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0026	3867	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0027	3867	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0028	3867	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0029	3867	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0030	3867	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062