JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH3TC2_chr5_148977150_149068062	0/0	c0031	3867	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0032	3867	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0033	3867	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0034	3867	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0035	3867	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0036	3867	1	0	0	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0037	3867	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	c0038	3867	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3YL1_chr2_213144_269032	1/1	c0001	1028	263	74	55	98	6	28	copy fasta	SH3YL1	chr2	213144	269032
SH3YL1_chr2_213144_269032	0/0	c0002	1028	91	14	19	38	7	13	copy fasta	SH3YL1	chr2	213144	269032
SH3YL1_chr2_213144_269032	0/0	c0003	1028	1	0	0	0	0	1	copy fasta	SH3YL1	chr2	213144	269032
SH3YL1_chr2_213144_269032	0/0	c0004	1028	1	0	0	1	0	0	copy fasta	SH3YL1	chr2	213144	269032
SH3YL1_chr2_213144_269032	0/0	c0005	1028	1	1	0	0	0	0	copy fasta	SH3YL1	chr2	213144	269032
SH3YL1_chr2_213144_269032	0/0	c0006	1028	1	0	0	1	0	0	copy fasta	SH3YL1	chr2	213144	269032
SH3YL1_chr2_213144_269032	0/0	c0007	1028	1	0	0	0	1	0	copy fasta	SH3YL1	chr2	213144	269032
SH3YL1_chr2_213144_269032	0/0	c0008	1028	1	1	0	0	0	0	copy fasta	SH3YL1	chr2	213144	269032
SHANK1_chr19_50654255_50724802	1/1	c0001	6486	88	6	15	48	3	14	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0002	6486	78	7	25	27	6	13	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0003	6486	51	33	11	2	2	3	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0004	6486	20	14	3	0	0	3	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0005	6486	12	0	1	9	1	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0006	6486	8	5	0	0	0	3	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0007	6486	5	5	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0008	6486	5	0	0	5	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0009	6486	4	4	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0010	6486	4	0	2	0	0	2	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0011	6486	3	1	1	0	1	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0012	6486	3	0	3	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0013	6486	2	2	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0014	6486	2	2	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0015	6486	2	0	0	1	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0016	6486	2	1	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0017	6486	2	0	2	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0018	6486	2	2	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0019	6486	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0020	6486	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0021	6486	1	0	0	0	1	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0022	6486	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0023	6486	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0024	6486	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0025	6486	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0026	6486	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0027	6486	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0028	6486	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0029	6486	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0030	6486	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0031	6486	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0032	6486	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0033	6486	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0034	6486	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802