JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHANK1_chr19_50654255_50724802	0/0	c0035	6486	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0036	6486	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0037	6486	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0038	6486	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0039	6486	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0040	6486	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	c0041	6486	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHARPIN_chr8_144093637_144108773	0/1	c0001	1164	258	57	63	96	8	33	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	1/0	c0002	1164	41	31	6	1	1	1	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0003	1164	5	1	2	0	2	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0004	1164	5	0	2	0	2	1	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0005	1164	4	4	0	0	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0006	1164	4	0	1	0	2	1	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0007	1164	4	0	0	4	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0008	1164	2	0	0	2	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0009	1164	2	2	0	0	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0010	1164	1	0	0	0	0	1	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0011	1164	1	1	0	0	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0012	1164	1	0	0	1	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0013	1164	1	0	0	1	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0014	1164	1	0	0	1	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0015	1164	1	0	0	0	1	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0016	1164	1	0	0	0	0	1	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0017	1164	1	0	1	0	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	c0018	1164	1	0	1	0	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHBG_chr17_7625135_7638372	1/1	c0001	1209	389	82	73	180	14	38	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	c0002	1209	28	0	3	21	2	2	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	c0003	1209	4	3	1	0	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	c0004	1209	3	3	0	0	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	c0005	1209	2	2	0	0	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	c0006	1209	2	0	0	0	0	2	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	c0007	1209	1	0	1	0	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	c0008	1209	1	1	0	0	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	c0009	1209	1	0	0	1	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	c0010	1209	1	1	0	0	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHB_chr9_37910898_38074227	0/1	c0001	1530	115	16	17	64	3	14	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0002	1530	70	10	24	14	2	20	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0003	1530	37	13	6	14	1	3	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0004	1530	27	5	7	6	5	4	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0005	1530	22	9	0	12	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0006	1530	7	0	2	4	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	1/0	c0007	1530	7	0	3	1	0	2	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0008	1530	5	4	1	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0009	1530	5	0	0	5	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0010	1530	4	3	1	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0011	1530	4	1	0	2	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0012	1530	3	0	3	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0013	1530	3	3	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0014	1530	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0015	1530	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227