JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHB_chr9_37910898_38074227	0/0	c0016	1530	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0017	1530	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0018	1530	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0019	1530	2	0	0	0	1	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0020	1530	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0021	1530	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0022	1530	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0023	1530	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0024	1530	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0025	1530	1	0	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0026	1530	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0027	1530	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	c0028	1530	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHC1_chr1_154957298_154975747	1/1	c0001	1755	200	42	40	74	10	32	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0002	1755	34	33	1	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0003	1755	16	12	3	0	0	1	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0004	1755	12	0	0	12	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0005	1755	5	0	3	1	0	1	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0006	1755	3	3	0	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0007	1755	3	1	2	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0008	1755	2	0	0	2	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0009	1755	2	0	0	2	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0010	1755	2	0	0	2	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0011	1755	2	0	0	2	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0012	1755	2	0	2	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0013	1755	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0014	1755	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0015	1755	1	0	1	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0016	1755	1	0	1	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0017	1755	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0018	1755	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0019	1755	1	1	0	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0020	1755	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0021	1755	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0022	1755	1	0	1	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	c0023	1755	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC2_chr19_411589_466033	0/0	c0001	1749	88	27	18	35	2	6	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0002	1749	38	2	7	23	0	6	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0003	1749	23	0	2	17	0	4	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	1/1	c0004	1749	16	0	6	0	1	7	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0005	1749	12	4	4	0	2	2	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0006	1749	6	4	1	0	1	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0007	1749	5	5	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0008	1749	3	3	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0009	1749	2	2	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0010	1749	2	0	0	2	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0011	1749	2	1	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0012	1749	2	0	0	1	0	1	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0013	1749	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0014	1749	1	0	1	0	0	0	copy fasta	SHC2	chr19	411589	466033