JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP13A4_chr3_193393967_193559895	0/0	c0010	3591	3	0	1	0	0	2	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0011	3591	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0012	3591	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0013	3591	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0014	3591	1	0	0	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0015	3591	1	0	0	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0016	3591	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0017	3591	1	0	1	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0018	3591	1	0	0	0	1	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0019	3591	1	0	1	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0020	3591	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0021	3591	1	0	0	0	0	1	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0022	3591	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0023	3591	1	0	1	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A5_chr3_193269789_193383753	0/0	c0001	3657	47	2	15	23	1	6	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0002	3657	44	17	4	22	1	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0003	3657	25	5	2	14	2	2	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0004	3657	21	2	1	18	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0005	3657	20	1	4	10	0	5	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/1	c0006	3657	19	4	5	3	0	6	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0007	3657	16	15	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0008	3657	11	1	5	0	0	5	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0009	3657	11	7	1	2	1	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0010	3657	7	2	2	3	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0011	3657	7	0	0	6	1	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0012	3657	6	5	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0013	3657	4	4	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0014	3657	3	0	3	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0015	3657	3	1	2	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	1/0	c0016	3657	3	0	1	0	0	1	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0017	3657	3	3	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0018	3657	2	0	2	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0019	3657	2	0	2	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0020	3657	2	2	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0021	3657	2	2	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0022	3657	2	2	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0023	3657	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0024	3657	1	0	0	1	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0025	3657	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0026	3657	1	0	0	1	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0027	3657	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0028	3657	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0029	3657	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0030	3657	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0031	3657	1	0	0	0	0	1	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0032	3657	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0033	3657	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0034	3657	1	0	0	0	0	1	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0035	3657	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0036	3657	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753