JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHCBP1_chr16_46573591_46626379	0/0	c0004	2019	4	0	0	4	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	c0005	2019	1	0	1	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	c0006	2019	1	1	0	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHD_chr19_4274266_4295722	0/0	c0001	1023	164	39	36	64	6	19	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0002	1023	110	14	19	57	7	13	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	1/0	c0003	1023	76	20	23	22	2	8	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0004	1023	54	6	1	47	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0005	1023	40	15	5	14	1	5	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/1	c0006	1023	8	0	2	0	0	5	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0007	1023	3	2	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0008	1023	1	0	0	0	1	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0009	1023	1	1	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0010	1023	1	0	0	0	1	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0011	1023	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0012	1023	1	1	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0013	1023	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	c0014	1023	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHE_chr1_154474481_154507412	0/1	c0001	1488	302	56	56	149	9	31	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	1/0	c0002	1488	72	34	11	18	1	7	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	c0003	1488	2	0	2	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	c0004	1484	2	0	0	2	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	c0005	1488	2	0	2	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	c0006	1488	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	c0007	1488	1	0	1	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHFL_chr19_10081317_10098243	1/1	c0001	876	441	90	84	204	14	47	copy fasta	SHFL	chr19	10081317	10098243
SHFL_chr19_10081317_10098243	0/0	c0002	876	2	2	0	0	0	0	copy fasta	SHFL	chr19	10081317	10098243
SHFL_chr19_10081317_10098243	0/0	c0003	876	1	0	0	0	0	1	copy fasta	SHFL	chr19	10081317	10098243
SHF_chr15_45162214_45192966	0/1	c0001	1467	336	89	66	130	10	40	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	1/0	c0002	1467	42	1	5	35	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	c0003	1467	14	0	0	14	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	c0004	1467	2	2	0	0	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	c0005	1467	1	0	1	0	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	c0006	1466	1	0	0	1	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	c0007	1467	1	0	0	1	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	c0008	1467	1	0	0	1	0	0	copy fasta	SHF	chr15	45162214	45192966
SHH_chr7_155794980_155817463	1/1	c0001	1389	400	92	72	172	16	46	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	c0002	1389	5	0	0	5	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	c0003	1389	3	3	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	c0004	1389	2	1	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	c0005	1389	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	c0006	1389	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	c0007	1389	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	c0008	1389	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHISA2_chr13_26039597_26057016	1/1	c0001	888	272	71	50	122	10	17	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0002	888	73	12	3	53	0	5	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0003	888	50	6	8	13	4	19	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0004	888	37	0	18	12	3	4	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0005	888	6	0	0	5	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0006	888	5	5	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0007	888	2	0	2	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016