JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHISA2_chr13_26039597_26057016	0/0	c0008	888	2	2	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0009	888	2	0	0	2	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0010	888	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0011	888	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0012	888	1	0	1	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0013	888	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0014	888	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0015	888	1	0	0	0	1	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	c0016	888	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA3_chr4_42392488_42407487	1/1	c0001	717	277	42	45	140	13	35	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	c0002	717	103	26	31	30	3	13	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	c0003	717	33	30	3	0	0	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	c0004	717	2	0	0	2	0	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	c0005	717	1	0	1	0	0	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA4_chr1_201883898_201897587	0/1	c0001	594	342	68	65	162	13	33	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	1/0	c0002	594	71	19	17	18	4	12	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	c0003	594	2	2	0	0	0	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	c0004	594	1	0	0	0	1	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	c0005	594	1	1	0	0	0	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	c0006	594	1	0	0	0	0	1	copy fasta	SHISA4	chr1	201883898	201897587
SHISA5_chr3_48462876_48509174	1/1	c0001	723	285	78	58	99	10	38	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	c0002	723	2	2	0	0	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	c0003	723	1	0	0	1	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	c0004	723	1	1	0	0	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	c0005	723	1	1	0	0	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA6_chr17_11236213_11569063	1/1	c0001	1656	135	52	25	35	6	15	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0002	1656	28	10	5	10	2	1	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0003	1656	15	13	2	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0004	1656	3	3	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0005	1656	2	2	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0006	1656	2	2	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0007	1656	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0008	1656	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0009	1656	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0010	1656	1	0	1	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0011	1656	1	0	1	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0012	1656	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	c0013	1656	1	0	0	1	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA7_chr19_55423740_55448300	1/1	c0001	1617	343	80	65	140	11	45	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	c0002	1618	10	1	5	3	1	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	c0003	1617	8	8	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	c0004	1617	4	3	1	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	c0005	1617	2	2	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	c0006	1617	2	0	0	1	0	1	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	c0007	1617	1	0	1	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	c0008	1617	1	0	0	1	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	c0009	1617	1	0	0	1	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA8_chr22_41904543_41920074	1/0	c0001	1194	318	62	65	137	12	41	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	c0002	1194	26	24	2	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/1	c0003	1194	22	1	5	9	2	4	copy fasta	SHISA8	chr22	41904543	41920074