JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHISA8_chr22_41904543_41920074	0/0	c0004	1194	2	0	0	0	0	2	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	c0005	1194	2	0	0	2	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	c0006	1194	2	0	0	2	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	c0007	1194	1	1	0	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	c0008	1194	1	0	0	0	0	1	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	c0009	1194	1	1	0	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	c0010	1194	1	1	0	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA9_chr16_12896598_13245416	0/0	c0001	1275	194	64	32	67	5	26	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	c0002	1275	10	10	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	c0003	1275	5	1	2	0	1	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	c0004	1275	2	2	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	c0005	1275	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	c0006	1275	1	0	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	c0007	1275	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISAL1_chr22_44238665_44317951	0/0	c0001	36354	3	0	3	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0002	36391	3	0	0	3	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0003	36352	3	0	0	3	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0004	36263	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0005	36379	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0006	36375	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0007	36380	2	0	1	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0008	36326	2	0	2	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0009	36396	2	0	2	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0010	36324	2	0	0	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0011	36386	2	0	0	0	2	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0012	36369	2	0	0	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0013	36389	2	0	0	0	0	2	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0014	36416	2	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0015	36370	2	0	0	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0016	36393	2	0	0	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0017	36359	2	0	2	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0018	36263	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0019	36408	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0020	36399	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0021	36357	2	0	0	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0022	36330	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0023	36363	2	0	0	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0024	36337	2	0	0	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0025	36302	2	0	0	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0026	36282	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0027	36409	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0028	36403	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0029	36345	1	0	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0030	36335	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0031	36404	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0032	36331	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0033	36370	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0034	36339	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0035	36332	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0036	36385	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951