JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
SHISAL1_chr22_44238665_44317951	0/0	c0037	36432	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0038	36339	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0039	36326	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0040	36378	1	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0041	36409	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0042	36399	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0043	36344	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0044	36374	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0045	36329	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0046	36393	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0047	36439	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0048	36336	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0049	36397	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0050	36387	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0051	36353	1	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0052	36393	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0053	36394	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0054	36376	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0055	36382	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0056	36379	1	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0057	36431	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0058	36401	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0059	36349	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0060	36389	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0061	36387	1	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0062	32714	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0063	36365	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0064	36403	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0065	36374	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0066	36378	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0067	36388	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0068	36402	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0069	36395	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0070	36376	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0071	36370	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0072	36416	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0073	36399	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0074	36394	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0075	36344	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0076	36416	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0077	36396	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0078	36382	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0079	36382	1	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0080	36384	1	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0081	36324	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0082	36325	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0083	36322	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0084	36377	1	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0085	36383	1	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0086	36334	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951