JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHISAL1_chr22_44238665_44317951	0/0	c0287	36361	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0288	36363	1	0	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0289	36367	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0290	36368	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0291	36364	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0292	36348	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0293	36398	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0294	36361	1	0	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0295	36358	1	0	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0296	36373	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0297	36376	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0298	36376	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0299	36353	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0300	36363	1	0	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0301	36353	1	0	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0302	36364	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0303	36369	1	0	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0304	36365	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0305	36318	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0306	36368	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0307	36354	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0308	36372	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0309	36342	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0310	36372	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0311	36346	1	0	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0312	36355	1	0	0	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0313	36360	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0314	36356	1	0	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0315	36339	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0316	36348	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0317	36366	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0318	36371	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0319	36352	1	0	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0320	36369	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0321	36306	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0322	36304	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0323	36327	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0324	36374	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0325	36416	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0326	36308	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0327	36361	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0328	36354	1	0	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0329	36385	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0330	36361	1	0	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	1/0	c0331	36342	1	0	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0332	36337	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0333	36378	1	0	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0334	36377	1	0	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0335	36369	1	0	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0336	36391	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951