JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHISAL1_chr22_44238665_44317951	0/0	c0337	36343	1	0	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0338	36361	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0339	36350	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0340	36358	1	0	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0341	36351	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0342	36304	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0343	36336	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0344	36323	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0345	36351	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0346	36348	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0347	36364	1	0	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0348	36285	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0349	36289	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0350	36282	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	c0351	36331	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL2A_chr1_52628168_52662065	1/1	c0001	573	436	95	73	201	16	49	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	c0002	573	3	3	0	0	0	0	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	c0003	573	2	0	2	0	0	0	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	c0004	573	1	0	1	0	0	0	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	c0005	573	1	0	0	0	0	1	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	c0006	573	1	0	0	1	0	0	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2B_chr5_64685503_64723190	1/1	c0001	483	203	39	48	84	9	21	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	c0002	483	153	26	25	78	5	19	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	c0003	483	22	19	3	0	0	0	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	c0004	483	11	11	0	0	0	0	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	c0005	483	1	1	0	0	0	0	copy fasta	SHISAL2B	chr5	64685503	64723190
SHKBP1_chr19_40571873_40596397	1/0	c0001	2124	152	19	31	79	9	13	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0002	2124	150	64	34	33	2	17	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/1	c0003	2124	46	0	7	28	4	6	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0004	2124	12	0	3	7	1	1	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0005	2124	6	0	0	6	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0006	2124	4	0	2	1	0	1	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0007	2124	3	2	1	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0008	2124	2	0	0	2	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0009	2124	2	0	0	2	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0010	2124	1	0	1	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0011	2124	1	0	0	1	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0012	2124	1	0	0	0	0	1	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0013	2124	1	1	0	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0014	2124	1	0	1	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0015	2124	1	0	0	1	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0016	2124	1	1	0	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0017	2124	1	1	0	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0018	2124	1	1	0	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0019	2124	1	1	0	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0020	2124	1	0	0	1	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0021	2124	1	1	0	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0022	2124	1	0	0	0	0	1	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0023	2124	1	0	0	1	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	c0024	2124	1	1	0	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397