JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP13A5_chr3_193269789_193383753	0/0	c0037	3657	1	0	0	1	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0038	3657	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0039	3657	1	0	0	1	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0040	3657	1	0	0	1	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0041	3657	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0042	3657	1	0	1	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0043	3657	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0044	3657	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0045	3657	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	c0046	3657	1	0	0	0	0	1	copy fasta	ATP13A5	chr3	193269789	193383753
ATP1A1_chr1_116368244_116409774	1/0	c0001	3072	237	31	45	122	12	26	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0002	3072	31	16	6	8	0	1	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0003	3072	30	27	1	0	0	2	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0004	3072	27	19	1	7	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0005	3072	2	0	0	2	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0006	3072	1	1	0	0	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0007	3072	1	0	0	1	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0008	3072	1	1	0	0	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0009	3072	1	0	0	0	0	1	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0010	3072	1	0	0	1	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/1	c0011	3072	1	0	0	0	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0012	3072	1	0	1	0	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0013	3072	1	1	0	0	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	c0014	3072	1	0	0	1	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A2_chr1_160110759_160148591	1/1	c0001	3063	276	53	55	132	12	22	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0002	3063	77	12	6	45	0	14	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0003	3063	24	1	9	8	2	4	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0004	3063	11	11	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0005	3063	7	5	2	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0006	3063	6	6	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0007	3063	2	0	0	2	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0008	3063	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0009	3063	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0010	3063	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0011	3063	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0012	3063	1	0	0	0	0	1	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0013	3063	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0014	3063	1	0	0	1	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0015	3063	1	0	0	1	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0016	3063	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0017	3063	1	0	0	0	0	1	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	c0018	3063	1	0	0	1	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A3_chr19_41961582_41999230	0/1	c0001	3042	221	58	41	81	7	33	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	1/0	c0002	3042	46	0	10	26	1	8	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	c0003	3042	4	4	0	0	0	0	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	c0004	3042	2	0	1	0	0	1	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	c0005	3042	2	0	0	0	0	2	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	c0006	3042	1	1	0	0	0	0	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	c0007	3042	1	0	0	0	0	1	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	c0008	3042	1	1	0	0	0	0	copy fasta	ATP1A3	chr19	41961582	41999230