JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHLD1_chr20_5745401_5869395	1/1	c0001	618	135	26	23	58	0	26	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0002	618	103	41	21	26	9	6	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0003	618	46	8	11	17	3	7	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0004	618	32	17	5	6	0	4	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0005	618	2	0	1	0	1	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0006	618	2	2	0	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0007	618	2	0	1	0	1	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0008	618	1	0	0	1	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0009	618	1	1	0	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0010	618	1	0	0	0	0	1	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0011	618	1	1	0	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0012	618	1	0	0	1	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	c0013	618	1	0	0	1	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD2_chr10_87090206_87196465	0/0	c0001	2715	139	45	32	42	4	16	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	1/0	c0002	2715	72	2	10	53	0	6	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/1	c0003	2715	48	10	16	15	2	4	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0004	2715	42	18	9	5	1	9	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0005	2715	12	0	0	8	0	4	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0006	2715	7	6	1	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0007	2715	3	0	2	0	1	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0008	2715	2	2	0	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0009	2715	2	2	0	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0010	2715	2	1	1	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0011	2715	2	0	0	2	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0012	2715	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0013	2715	1	1	0	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0014	2715	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0015	2715	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0016	2715	1	0	1	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0017	2715	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0018	2715	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0019	2715	1	1	0	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	c0020	2715	1	0	0	0	0	1	copy fasta	SHLD2	chr10	87090206	87196465
SHLD3_chr5_65620027_65635928	1/0	c0001	753	310	67	64	130	16	32	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	c0002	753	43	13	9	18	0	3	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/1	c0003	753	40	8	5	17	0	9	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	c0004	753	9	9	0	0	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	c0005	753	1	0	0	1	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	c0006	753	1	0	0	1	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	c0007	753	1	0	0	1	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	c0008	753	1	1	0	0	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHMT1_chr17_18322873_18368550	1/1	c0001	1452	169	30	35	77	5	20	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	c0002	1452	41	10	9	15	3	4	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	c0003	1452	6	6	0	0	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	c0004	1452	2	1	0	1	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	c0005	1452	1	0	0	1	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	c0006	1452	1	1	0	0	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT2_chr12_57224711_57239935	1/0	c0001	1515	311	87	59	112	13	39	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	c0002	1515	37	1	7	26	0	3	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	c0003	1515	24	1	0	23	0	0	copy fasta	SHMT2	chr12	57224711	57239935