JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHQ1_chr3_72744277_72853445	0/0	c0007	1734	2	2	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	c0008	1734	2	2	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	c0009	1734	2	2	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	c0010	1734	1	0	0	1	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	c0011	1734	1	1	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	c0012	1734	1	0	1	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHROOM1_chr5_132817141_132835647	1/1	c0001	2559	267	54	48	135	7	21	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0002	2559	53	5	7	29	4	8	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0003	2559	41	20	4	17	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0004	2559	10	7	3	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0005	2559	5	5	0	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0006	2559	4	0	0	4	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0007	2559	3	0	1	1	0	1	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0008	2559	2	1	0	0	1	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0009	2559	2	2	0	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0010	2559	1	0	0	0	0	1	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0011	2559	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0012	2559	1	0	1	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0013	2559	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0014	2559	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0015	2559	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0016	2559	1	0	0	0	0	1	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0017	2559	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	c0018	2559	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM2_chrX_9781429_9954443	0/0	c0001	4851	60	2	21	21	3	13	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/1	c0002	4851	22	2	7	9	1	2	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0003	4851	21	2	4	9	5	1	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0004	4851	15	1	3	10	0	1	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0005	4851	11	4	2	5	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0006	4851	11	1	0	10	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	1/0	c0007	4851	7	1	3	0	0	2	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0008	4851	6	6	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0009	4851	5	1	0	4	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0010	4851	4	4	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0011	4851	4	2	2	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0012	4851	3	1	1	0	1	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0013	4851	3	1	2	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0014	4851	3	0	0	3	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0015	4851	3	3	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0016	4851	3	2	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0017	4851	3	0	0	3	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0018	4851	2	2	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0019	4851	2	2	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0020	4851	2	1	1	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0021	4839	2	0	0	2	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0022	4839	2	0	0	2	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0023	4851	2	2	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0024	4851	2	0	2	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0025	4851	2	1	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0026	4852	1	0	0	0	0	1	copy fasta	SHROOM2	chrX	9781429	9954443