JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHROOM2_chrX_9781429_9954443	0/0	c0077	4851	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0078	4851	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0079	4851	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0080	4851	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	c0081	4851	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM3_chr4_76430229_76788253	0/0	c0001	5991	47	8	9	25	2	3	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0002	5991	43	9	6	19	0	9	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	1/1	c0003	5991	42	3	5	28	1	3	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0004	5991	7	5	1	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0005	5991	5	0	4	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0006	5991	5	4	0	0	1	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0007	5991	5	5	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0008	5991	4	1	2	0	1	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0009	5991	3	1	2	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0010	5991	3	3	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0011	5991	3	3	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0012	5991	3	3	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0013	5991	3	0	3	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0014	5991	3	0	0	3	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0015	5991	2	2	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0016	5991	2	0	0	2	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0017	5991	2	2	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0018	5991	2	2	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0019	5991	2	1	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0020	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0021	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0022	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0023	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0024	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0025	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0026	5991	1	0	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0027	5991	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0028	5991	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0029	5991	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0030	5991	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0031	5991	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0032	5991	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0033	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0034	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0035	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0036	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0037	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0038	5991	1	0	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0039	5991	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0040	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0041	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0042	5991	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0043	5991	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0044	5991	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0045	5991	1	0	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253