JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHROOM3_chr4_76430229_76788253	0/0	c0046	5991	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0047	5991	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0048	5991	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0049	5991	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0050	5991	1	0	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	c0051	5991	1	0	0	0	1	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM4_chrX_50581796_50819194	1/0	c0001	4482	91	21	13	42	5	9	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/1	c0002	4497	23	6	8	2	0	6	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0003	4497	14	0	0	14	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0004	4494	10	9	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0005	4482	6	5	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0006	4494	5	5	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0007	4482	3	0	1	2	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0008	4494	2	2	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0009	4494	2	2	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0010	4494	2	0	1	0	0	1	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0011	4483	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0012	4494	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0013	4494	1	0	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0014	4482	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0015	4494	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0016	4497	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0017	4481	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0018	4482	1	0	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0019	4482	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0020	4482	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0021	4494	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0022	4497	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0023	4482	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0024	4482	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0025	4482	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0026	4482	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	c0027	4481	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHTN1_chr10_116876477_117010187	1/1	c0001	1896	282	77	49	126	4	24	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	c0002	1896	8	7	1	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	c0003	1896	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	c0004	1896	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SIAE_chr11_124628113_124678739	1/0	c0001	1572	183	31	49	65	8	29	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0002	1572	32	1	0	31	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0003	1572	16	16	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0004	1572	13	11	2	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0005	1572	11	9	0	0	0	2	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0006	1572	11	10	1	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0007	1572	9	7	0	2	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/1	c0008	1572	4	0	2	1	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0009	1572	3	2	0	1	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0010	1572	2	0	0	1	0	1	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0011	1572	2	0	2	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0012	1572	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0013	1572	1	0	0	1	0	0	copy fasta	SIAE	chr11	124628113	124678739