JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIAE_chr11_124628113_124678739	0/0	c0014	1572	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	c0015	1572	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAH1_chr16_48355531_48390413	1/1	c0001	849	235	64	46	89	12	22	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	c0002	849	15	10	0	5	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	c0003	849	6	6	0	0	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH2_chr3_150736125_150768169	1/1	c0001	975	333	93	52	137	10	39	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	c0002	975	12	2	0	7	0	3	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	c0003	975	1	1	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH3_chr13_45772242_45856753	1/1	c0001	810	361	91	80	125	16	47	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	c0002	810	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	c0003	810	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	c0004	810	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIDT1_chr3_113527555_113634575	1/0	c0001	2484	130	28	30	40	12	19	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0002	2484	63	8	9	40	1	5	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0003	2484	13	1	0	11	1	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0004	2484	12	1	0	11	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0005	2484	11	8	3	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0006	2484	7	6	1	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0007	2484	7	0	2	5	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0008	2484	4	4	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0009	2484	4	4	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0010	2484	4	0	2	1	0	1	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0011	2484	4	0	0	4	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0012	2484	4	2	1	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0013	2484	3	0	2	0	0	1	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0014	2484	3	3	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0015	2484	3	3	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0016	2484	2	2	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0017	2484	2	0	0	2	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0018	2484	2	2	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0019	2484	2	2	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0020	2484	2	0	0	2	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0021	2484	2	0	0	2	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0022	2484	2	0	0	1	0	1	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0023	2484	2	0	0	2	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0024	2484	2	0	0	2	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0025	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0026	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0027	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/1	c0028	2484	1	0	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0029	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0030	2484	1	0	0	0	0	1	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0031	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0032	2484	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0033	2484	1	0	1	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0034	2484	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0035	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0036	2484	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0037	2484	1	0	1	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0038	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575