JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIDT1_chr3_113527555_113634575	0/0	c0039	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0040	2484	1	0	1	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0041	2484	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0042	2484	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0043	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0044	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0045	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0046	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0047	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0048	2484	1	0	1	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0049	2484	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0050	2484	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0051	2484	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	c0052	2484	1	0	0	1	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT2_chr11_117173743_117202442	1/1	c0001	2499	387	83	70	176	15	41	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0002	2499	10	1	5	4	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0003	2499	4	0	0	4	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0004	2499	3	2	1	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0005	2499	2	0	0	2	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0006	2499	2	2	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0007	2499	2	0	0	2	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0008	2499	2	0	2	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0009	2499	2	2	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0010	2499	1	1	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0011	2499	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0012	2499	1	0	0	0	1	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0013	2499	1	1	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0014	2499	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0015	2499	1	0	0	0	0	1	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0016	2499	1	0	0	0	0	1	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0017	2499	1	1	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0018	2499	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0019	2499	1	0	1	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0020	2499	1	0	1	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0021	2499	1	0	0	0	0	1	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0022	2499	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0023	2499	1	1	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0024	2499	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	c0025	2499	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIGIRR_chr11_400716_419999	0/0	c0001	1233	197	58	36	79	9	15	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	1/1	c0002	1233	8	1	3	0	1	1	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0003	1233	7	2	0	3	0	2	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0004	1233	6	6	0	0	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0005	1233	6	0	4	0	2	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0006	1233	5	4	1	0	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0007	1234	3	2	0	1	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0008	1234	2	0	0	2	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0009	1233	2	0	0	1	0	1	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0010	1233	1	1	0	0	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0011	1233	1	0	0	1	0	0	copy fasta	SIGIRR	chr11	400716	419999