JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIGIRR_chr11_400716_419999	0/0	c0012	1233	1	0	1	0	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0013	1233	1	0	0	1	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0014	1234	1	0	0	0	0	1	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	c0015	1234	1	0	1	0	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGLEC10_chr19_51405020_51422642	0/1	c0001	2094	195	8	39	113	9	25	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0002	2094	91	46	23	0	7	15	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0003	2094	32	11	5	13	0	3	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0004	2094	19	3	3	9	0	4	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0005	2094	12	10	2	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	1/0	c0006	2094	11	5	1	3	1	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0007	2094	8	1	2	4	1	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0008	2094	5	0	0	5	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0009	2094	4	0	3	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0010	2094	4	0	0	4	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0011	2094	3	0	0	3	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0012	2094	3	2	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0013	2094	2	0	0	2	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0014	2094	2	0	0	2	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0015	2094	2	0	1	0	0	1	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0016	2094	2	0	0	2	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0017	2094	2	2	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0018	2094	2	2	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0019	2094	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0020	2094	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0021	2094	1	0	0	0	0	1	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0022	2094	1	0	0	0	0	1	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0023	2094	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0024	2094	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0025	2094	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0026	2094	1	0	1	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0027	2094	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0028	2094	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0029	2094	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0030	2094	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0031	2094	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0032	2094	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0033	2094	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0034	2094	1	0	1	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0035	2094	1	0	1	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0036	2094	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0037	2094	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0038	2094	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	c0039	2094	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC11_chr19_49943985_49966172	1/0	c0001	2097	148	24	43	59	7	14	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/1	c0002	2097	100	8	11	60	2	18	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0003	2097	52	0	2	47	0	3	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0004	2093	24	21	2	0	0	1	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0005	2097	20	4	11	3	1	1	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0006	2097	19	1	0	18	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0007	2097	9	1	1	3	0	4	copy fasta	SIGLEC11	chr19	49943985	49966172