JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP1A3_chr19_41961582_41999230	0/0	c0009	3042	1	1	0	0	0	0	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	c0010	3042	1	0	0	1	0	0	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	c0011	3042	1	1	0	0	0	0	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	c0012	3042	1	0	0	0	0	1	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A4_chr1_160146603_160191980	0/0	c0001	3090	59	3	16	33	1	6	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/1	c0002	3090	53	3	17	25	3	4	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0003	3090	47	5	9	24	2	7	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0004	3090	45	5	18	15	2	5	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0005	3090	39	27	0	10	0	2	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0006	3090	33	5	7	16	1	4	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0007	3090	15	0	0	15	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0008	3090	13	13	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0009	3090	12	0	2	5	3	2	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0010	3090	6	2	0	3	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0011	3090	6	0	4	2	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0012	3090	5	0	0	5	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0013	3090	5	5	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0014	3090	5	0	3	0	1	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0015	3090	4	4	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0016	3090	4	0	0	4	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0017	3090	4	0	0	3	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0018	3090	3	0	2	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0019	3090	3	3	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0020	3090	3	1	1	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0021	3090	3	0	0	3	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0022	3090	2	2	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0023	3090	2	0	0	2	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0024	3090	2	0	0	2	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0025	3090	2	2	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0026	3090	2	0	1	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0027	3090	2	2	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0028	3090	2	0	0	0	0	2	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0029	3090	2	0	1	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0030	3090	2	0	0	0	0	2	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0031	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0032	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0033	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0034	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0035	3090	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0036	3090	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0037	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0038	3090	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0039	3090	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0040	3090	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0041	3090	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0042	3090	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0043	3090	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0044	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0045	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0046	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980