JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIGLEC11_chr19_49943985_49966172	0/0	c0008	2093	8	8	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0009	2093	7	6	1	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0010	2097	4	0	4	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0011	2093	4	4	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0012	2097	3	0	0	0	0	3	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0013	2097	3	0	0	3	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0014	2097	3	3	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0015	2093	3	1	1	0	1	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0016	2097	3	1	0	2	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0017	2097	3	0	0	3	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0018	2097	2	0	0	2	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0019	2097	2	0	0	2	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0020	2097	2	0	0	0	2	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0021	2093	2	2	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0022	2093	2	0	0	0	0	2	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0023	2093	2	2	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0024	2097	2	0	0	0	0	2	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0025	2093	2	2	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0026	2093	2	0	2	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0027	2097	1	0	0	0	0	1	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0028	2093	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0029	2097	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0030	2093	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0031	2097	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0032	2093	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0033	2097	1	0	0	1	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0034	2097	1	0	0	1	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0035	2097	1	0	0	1	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0036	2097	1	0	1	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0037	2097	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0038	2097	1	0	0	1	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0039	2093	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0040	2097	1	0	0	0	0	1	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0041	2097	1	0	0	0	1	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0042	2097	1	0	1	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0043	2093	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0044	2093	1	0	1	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0045	2093	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0046	2093	1	1	0	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	c0047	2093	1	0	1	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC12_chr19_51486227_51506800	1/0	c0001	1788	102	4	6	84	2	5	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/1	c0002	1789	96	4	33	28	7	23	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0003	1789	77	40	11	25	0	1	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0004	1788	32	2	1	21	0	8	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0005	1789	15	0	0	15	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0006	1788	11	6	4	0	0	1	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0007	1788	8	8	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0008	1788	7	0	5	0	0	2	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0009	1788	7	1	3	0	3	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0010	1789	6	6	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800