JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIGLEC12_chr19_51486227_51506800	0/0	c0011	1788	6	1	0	5	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0012	1789	4	4	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0013	1788	4	0	1	0	1	2	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0014	1789	3	0	0	0	0	3	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0015	1788	3	0	0	3	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0016	1789	3	0	2	0	0	1	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0017	1789	3	3	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0018	1789	2	0	1	0	0	1	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0019	1789	2	1	0	0	0	1	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0020	1789	2	0	2	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0021	1788	2	2	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0022	1788	2	2	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0023	1788	2	0	0	0	2	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0024	1788	2	0	0	2	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0025	1789	2	0	2	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0026	1788	2	2	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0027	1788	2	2	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0028	1788	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0029	1789	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0030	1789	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0031	1789	1	0	0	0	0	1	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0032	1789	1	0	0	0	1	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0033	1789	1	0	0	0	0	1	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0034	1789	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0035	1789	1	0	1	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0036	1789	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0037	1789	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0038	1789	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0039	1789	1	0	1	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0040	1789	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0041	1788	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0042	1788	1	0	1	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0043	1788	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0044	1788	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0045	1788	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0046	1788	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0047	1788	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0048	1789	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0049	1788	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0050	1788	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0051	1788	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	c0052	1789	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC14_chr19_51634478_51651825	1/0	c0001	1191	196	53	40	78	6	18	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/1	c0002	1191	79	24	27	12	4	11	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0003	1191	6	0	6	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0004	1191	6	6	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0005	1191	2	0	2	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0006	1191	1	0	1	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0007	17625	1	0	0	1	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0008	1191	1	0	0	1	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825