JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIGLEC5_chr19_51605960_51635401	0/0	c0044	1656	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0045	1656	1	0	0	0	0	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0046	1656	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0047	1656	1	0	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0048	18366	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0049	1656	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0050	1656	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0051	1656	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0052	1656	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0053	18080	1	0	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0054	1656	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0055	1235	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0056	1235	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0057	1235	1	0	0	0	0	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0058	1338	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC6_chr19_51512819_51536670	1/1	c0001	1362	320	68	46	161	9	34	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0002	1362	33	1	3	20	3	6	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0003	1362	26	1	18	0	2	5	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0004	1362	9	2	5	0	1	1	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0005	1362	6	0	1	5	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0006	1362	6	6	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0007	1362	4	0	2	0	0	2	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0008	1362	4	4	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0009	1362	3	0	0	3	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0010	1362	2	2	0	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0011	1362	2	0	1	0	1	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0012	1362	1	0	1	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0013	1362	1	0	1	0	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC6_chr19_51512819_51536670	0/0	c0014	1362	1	0	0	1	0	0	copy fasta	SIGLEC6	chr19	51512819	51536670
SIGLEC7_chr19_51137301_51158526	0/1	c0001	1404	258	41	62	107	10	37	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	1/0	c0002	1404	128	36	15	62	6	8	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	c0003	1404	6	6	0	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	c0004	1404	2	0	0	2	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	c0005	1404	2	2	0	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	c0006	1404	2	2	0	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	c0007	1404	1	0	0	0	0	1	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	c0008	1404	1	0	0	1	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	c0009	1404	1	0	1	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	c0010	1404	1	1	0	0	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	c0011	1404	1	0	0	1	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC7_chr19_51137301_51158526	0/0	c0012	1404	1	0	0	1	0	0	copy fasta	SIGLEC7	chr19	51137301	51158526
SIGLEC8_chr19_51445997_51463454	1/1	c0001	1500	290	34	50	152	13	39	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0002	1500	77	38	13	24	0	2	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0003	1500	54	4	12	29	4	5	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0004	1500	8	7	1	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0005	1500	4	4	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0006	1500	3	0	0	3	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0007	1500	2	2	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0008	1500	2	2	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0009	1500	2	2	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454