JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIGLEC8_chr19_51445997_51463454	0/0	c0010	1500	2	2	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0011	1500	2	0	0	2	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0012	1500	1	0	0	1	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0013	1500	1	1	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0014	1500	1	1	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0015	1500	1	0	0	1	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0016	1500	1	0	0	0	1	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC8_chr19_51445997_51463454	0/0	c0017	1500	1	1	0	0	0	0	copy fasta	SIGLEC8	chr19	51445997	51463454
SIGLEC9_chr19_51119906_51135310	0/0	c0001	1392	201	37	29	98	9	28	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	1/1	c0002	1392	171	5	46	92	7	19	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0003	1392	20	19	1	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0004	1392	9	9	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0005	1392	6	6	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0006	1392	5	4	1	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0007	1392	4	4	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0008	1392	4	3	1	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0009	1392	3	3	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0010	1392	3	0	0	3	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0011	1392	2	2	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0012	1392	2	2	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0013	1392	1	0	0	0	0	1	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0014	1392	1	1	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0015	1392	1	1	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0016	1392	1	0	0	1	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0017	1392	1	0	0	0	0	1	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0018	1392	1	1	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0019	1392	1	0	0	1	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0020	1392	1	0	0	0	0	1	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0021	1392	1	0	1	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0022	1392	1	0	0	1	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0023	1392	1	0	1	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLEC9_chr19_51119906_51135310	0/0	c0024	1392	1	1	0	0	0	0	copy fasta	SIGLEC9	chr19	51119906	51135310
SIGLECL1_chr19_51246080_51274330	1/1	c0001	594	390	92	64	180	16	36	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	c0002	594	2	0	0	0	0	2	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	c0003	594	2	2	0	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGLECL1_chr19_51246080_51274330	0/0	c0004	594	2	2	0	0	0	0	copy fasta	SIGLECL1	chr19	51246080	51274330
SIGMAR1_chr9_34629722_34642787	1/1	c0001	672	277	53	56	110	14	42	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	c0002	672	115	21	19	69	2	4	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	c0003	672	15	14	1	0	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	c0004	672	13	0	0	13	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	c0005	672	8	8	0	0	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	c0006	672	8	2	0	6	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	c0007	672	1	0	0	1	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIGMAR1_chr9_34629722_34642787	0/0	c0008	672	1	0	0	1	0	0	copy fasta	SIGMAR1	chr9	34629722	34642787
SIK1_chr21_43409483_43432131	0/0	c0001	2352	17	11	0	0	0	6	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	c0002	2352	9	9	0	0	0	0	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	c0003	2352	2	2	0	0	0	0	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	c0004	2352	1	0	0	0	0	1	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	c0005	2352	1	0	0	0	0	1	copy fasta	SIK1	chr21	43409483	43432131
SIK1_chr21_43409483_43432131	0/0	c0006	2352	1	0	0	0	0	1	copy fasta	SIK1	chr21	43409483	43432131