JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIK1_chr21_43409483_43432131	0/0	c0007	2352	1	0	0	0	0	1	copy fasta	SIK1	chr21	43409483	43432131
SIK2_chr11_111597449_111735855	1/1	c0001	2781	191	82	48	38	9	12	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	c0002	2781	2	0	1	0	1	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	c0003	2781	1	0	1	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	c0004	2781	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	c0005	2781	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	c0006	2781	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK2_chr11_111597449_111735855	0/0	c0007	2781	1	1	0	0	0	0	copy fasta	SIK2	chr11	111597449	111735855
SIK3_chr11_116838402_117103428	1/1	c0001	4110	215	25	34	120	7	27	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0002	4110	58	31	9	18	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0003	4110	33	4	12	10	2	5	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0004	4110	22	0	3	4	3	12	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0005	4110	7	6	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0006	4110	6	5	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0007	4101	4	4	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0008	4110	2	2	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0009	4110	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0010	4110	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0011	4110	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0012	4110	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0013	4110	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0014	4110	1	0	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0015	4110	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0016	4110	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0017	4110	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0018	4110	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0019	4110	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0020	4110	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0021	4110	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0022	4110	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0023	4110	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0024	4110	1	0	1	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0025	4110	1	0	0	1	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0026	4110	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIK3_chr11_116838402_117103428	0/0	c0027	4110	1	1	0	0	0	0	copy fasta	SIK3	chr11	116838402	117103428
SIKE1_chr1_114764479_114785685	1/1	c0001	624	349	87	72	126	16	46	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	c0002	624	5	0	0	5	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	c0003	624	2	2	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	c0004	662	1	0	0	1	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIKE1_chr1_114764479_114785685	0/0	c0005	624	1	1	0	0	0	0	copy fasta	SIKE1	chr1	114764479	114785685
SIL1_chr5_138941724_139203368	0/1	c0001	1386	96	27	20	35	2	11	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	1/0	c0002	1386	84	23	17	28	2	13	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	c0003	1386	4	4	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	c0004	1386	3	3	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	c0005	1386	3	2	1	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	c0006	1386	2	2	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	c0007	1386	2	2	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	c0008	1386	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	c0009	1386	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	c0010	1386	1	0	0	1	0	0	copy fasta	SIL1	chr5	138941724	139203368