JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIL1_chr5_138941724_139203368	0/0	c0011	1386	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	c0012	1386	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIL1_chr5_138941724_139203368	0/0	c0013	1386	1	1	0	0	0	0	copy fasta	SIL1	chr5	138941724	139203368
SIM1_chr6_100380009_100469921	1/1	c0001	2301	231	78	42	77	13	19	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	c0002	2301	78	0	12	54	4	8	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	c0003	2301	4	0	0	0	1	3	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	c0004	2301	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	c0005	2301	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	c0006	2301	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	c0007	2301	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	c0008	2301	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	c0009	2301	1	1	0	0	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM1_chr6_100380009_100469921	0/0	c0010	2301	1	0	0	1	0	0	copy fasta	SIM1	chr6	100380009	100469921
SIM2_chr21_36694115_36754917	1/0	c0001	2004	218	39	41	115	8	14	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0002	2004	101	27	16	41	4	13	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/1	c0003	2004	43	1	14	4	5	18	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0004	2004	12	9	3	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0005	2004	5	3	2	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0006	2004	4	3	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0007	2004	4	4	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0008	2004	3	3	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0009	2004	3	0	1	0	1	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0010	2004	2	0	0	2	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0011	2004	2	0	0	2	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0012	2004	2	0	2	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0013	2004	1	0	0	0	0	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0014	2004	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0015	2004	1	0	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0016	2004	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0017	2004	1	0	0	1	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0018	2004	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0019	2004	1	0	0	0	0	1	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0020	2004	1	0	1	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0021	2004	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0022	2004	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIM2_chr21_36694115_36754917	0/0	c0023	2004	1	1	0	0	0	0	copy fasta	SIM2	chr21	36694115	36754917
SIMC1_chr5_176233424_176350989	1/1	c0001	2676	275	68	48	121	8	28	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0002	2676	49	5	8	29	2	5	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0003	2676	8	5	2	1	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0004	2676	6	5	1	0	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0005	2676	4	3	1	0	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0006	2676	4	0	0	4	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0007	2676	3	0	0	3	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0008	2676	2	0	0	1	0	1	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0009	2676	2	0	0	2	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0010	2676	1	0	0	1	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0011	2676	1	0	0	1	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0012	2676	1	0	0	1	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0013	2676	1	0	0	1	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0014	2676	1	0	0	1	0	0	copy fasta	SIMC1	chr5	176233424	176350989