JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIMC1_chr5_176233424_176350989	0/0	c0015	2676	1	1	0	0	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIMC1_chr5_176233424_176350989	0/0	c0016	2676	1	1	0	0	0	0	copy fasta	SIMC1	chr5	176233424	176350989
SIN3A_chr15_75364379_75456690	1/0	c0001	3822	314	68	52	148	12	33	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	c0002	3822	2	0	0	2	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	c0003	3822	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	c0004	3822	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/1	c0005	3822	1	0	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	c0006	3822	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	c0007	3822	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	c0008	3822	1	0	0	0	0	1	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	c0009	3822	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3A_chr15_75364379_75456690	0/0	c0010	3822	1	1	0	0	0	0	copy fasta	SIN3A	chr15	75364379	75456690
SIN3B_chr19_16824398_16885349	1/1	c0001	3393	290	84	56	113	11	24	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0002	3393	50	0	4	39	1	6	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0003	3393	12	0	11	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0004	3393	4	4	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0005	3393	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0006	3393	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0007	3393	1	0	1	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0008	3393	1	0	0	0	0	1	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0009	3393	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0010	3393	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0011	3393	1	0	1	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0012	3393	1	0	1	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0013	3393	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0014	3393	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0015	3393	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0016	3393	1	0	1	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0017	3393	1	0	0	1	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0018	3393	1	0	1	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0019	3393	1	1	0	0	0	0	copy fasta	SIN3B	chr19	16824398	16885349
SIN3B_chr19_16824398_16885349	0/0	c0020	3393	1	0	0	0	0	1	copy fasta	SIN3B	chr19	16824398	16885349
SINHCAF_chr12_31275584_31331150	0/1	c0001	666	347	75	72	149	14	36	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	c0002	666	1	0	0	1	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SINHCAF_chr12_31275584_31331150	0/0	c0003	666	1	1	0	0	0	0	copy fasta	SINHCAF	chr12	31275584	31331150
SIPA1L1_chr14_71315476_71746209	0/1	c0001	5352	126	41	30	34	7	13	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0002	5352	19	3	3	8	2	3	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	1/0	c0003	5352	9	1	7	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0004	5352	3	3	0	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0005	5352	2	0	1	0	1	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0006	5352	2	1	1	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0007	5352	2	0	0	2	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0008	5352	1	0	0	1	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0009	5352	1	0	0	1	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0010	5352	1	0	0	1	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0011	5352	1	0	0	1	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0012	5352	1	0	0	0	0	1	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0013	5352	1	0	0	1	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0014	5352	1	0	0	1	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0015	5352	1	0	0	0	0	1	copy fasta	SIPA1L1	chr14	71315476	71746209