JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP1A4_chr1_160146603_160191980	0/0	c0047	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0048	3090	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0049	3090	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0050	3090	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0051	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0052	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0053	3090	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0054	3090	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	1/0	c0055	3090	1	0	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0056	3090	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0057	3090	1	0	1	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0058	3090	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0059	3090	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0060	3090	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0061	3090	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0062	3090	1	0	0	0	1	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	c0063	3090	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1B1_chr1_169101690_169137719	1/1	c0001	912	408	90	75	180	18	43	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	c0002	912	2	1	1	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	c0003	912	1	1	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	c0004	912	1	0	0	0	0	1	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B2_chr17_7645926_7662770	0/1	c0001	873	298	76	65	115	10	31	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	1/0	c0002	873	130	11	19	82	4	13	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	c0003	873	5	5	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	c0004	873	2	0	0	0	2	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	c0005	873	2	1	1	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	c0006	873	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	c0007	873	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	c0008	873	1	0	1	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B3_chr3_141871643_141931549	1/1	c0001	840	403	89	62	192	14	44	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	c0002	840	2	2	0	0	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	c0003	840	2	0	0	0	2	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	c0004	840	1	1	0	0	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B4_chrX_120357089_120388237	1/1	c0001	1074	303	74	62	123	11	31	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	c0002	1074	40	0	1	39	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	c0003	1074	4	0	0	0	1	3	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	c0004	1081	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	c0005	1075	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	c0006	1068	1	0	1	0	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	c0007	1074	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	c0008	1070	1	0	0	1	0	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	c0009	1074	1	0	0	0	1	0	copy fasta	ATP1B4	chrX	120357089	120388237
ATP23_chr12_57936567_57964148	0/0	c0001	741	146	8	22	96	10	10	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/1	c0002	741	138	29	32	52	5	19	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	c0003	741	84	27	18	29	1	9	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	c0004	741	17	15	1	1	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	c0005	741	4	3	1	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	c0006	741	2	0	2	0	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	c0007	741	1	0	0	1	0	0	copy fasta	ATP23	chr12	57936567	57964148
ATP23_chr12_57936567_57964148	0/0	c0008	741	1	0	0	1	0	0	copy fasta	ATP23	chr12	57936567	57964148