JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIPA1L1_chr14_71315476_71746209	0/0	c0016	5352	1	1	0	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0017	5352	1	1	0	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L1_chr14_71315476_71746209	0/0	c0018	5352	1	1	0	0	0	0	copy fasta	SIPA1L1	chr14	71315476	71746209
SIPA1L2_chr1_232392965_232635133	0/0	c0001	5169	33	6	8	14	0	5	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0002	5169	29	13	5	4	3	4	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0003	5169	25	21	0	1	0	3	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0004	5169	17	0	2	13	0	2	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0005	5169	15	9	0	4	0	2	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0006	5169	11	10	0	0	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0007	5169	11	3	2	6	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0008	5169	10	7	2	0	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/1	c0009	5169	9	0	7	0	1	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0010	5169	8	0	7	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0011	5169	7	0	2	3	1	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0012	5169	6	2	2	1	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0013	5169	6	0	1	4	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0014	5169	6	5	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0015	5169	5	0	0	4	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	1/0	c0016	5169	5	0	1	1	1	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0017	5169	4	0	3	0	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0018	5169	4	0	0	4	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0019	5169	4	0	0	3	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0020	5169	3	0	1	2	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0021	5169	3	0	0	3	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0022	5169	3	0	0	3	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0023	5169	3	1	0	0	0	2	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0024	5169	3	0	0	1	0	2	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0025	5169	3	0	0	3	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0026	5169	3	0	0	3	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0027	5169	2	0	1	0	1	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0028	5169	2	0	0	0	1	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0029	5169	2	0	0	1	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0030	5169	2	0	0	2	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0031	5169	2	2	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0032	5169	2	0	0	1	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0033	5169	2	2	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0034	5169	2	0	0	2	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0035	5169	2	0	2	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0036	5169	2	0	1	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0037	5169	2	0	0	2	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0038	5169	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0039	5169	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0040	5169	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0041	5169	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0042	5169	1	0	0	0	1	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0043	5169	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0044	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0045	5169	1	0	0	0	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0046	5169	1	0	0	0	0	1	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0047	5169	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133