JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIPA1L2_chr1_232392965_232635133	0/0	c0048	5169	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0049	5169	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0050	5169	1	0	0	0	1	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0051	5169	1	0	0	0	1	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0052	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0053	5169	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0054	5169	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0055	5169	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0056	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0057	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0058	5169	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0059	5169	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0060	5169	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0061	5169	1	0	0	0	1	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0062	5169	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0063	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0064	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0065	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0066	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0067	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0068	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0069	5169	1	0	0	1	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0070	5169	1	0	1	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L2_chr1_232392965_232635133	0/0	c0071	5169	1	1	0	0	0	0	copy fasta	SIPA1L2	chr1	232392965	232635133
SIPA1L3_chr19_37902208_38213369	1/0	c0001	5346	55	27	10	11	1	5	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/1	c0002	5346	29	12	6	5	2	3	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0003	5346	15	1	4	6	1	3	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0004	5346	6	4	2	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0005	5346	4	4	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0006	5346	4	4	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0007	5346	3	1	1	0	0	1	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0008	5346	3	3	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0009	5346	3	0	0	3	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0010	5346	3	0	0	0	2	1	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0011	5352	3	0	1	2	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0012	5346	2	2	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0013	5346	2	0	0	2	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0014	5346	2	1	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0015	5346	2	1	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0016	5346	2	0	0	2	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0017	5346	2	0	0	2	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0018	5346	2	0	1	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0019	5346	1	0	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0020	5346	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0021	5346	1	0	0	0	1	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0022	5346	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0023	5346	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0024	5346	1	0	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0025	5346	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0026	5346	1	0	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369