JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIPA1L3_chr19_37902208_38213369	0/0	c0027	5346	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0028	5346	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0029	5346	1	0	0	1	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0030	5346	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0031	5346	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0032	5346	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0033	5346	1	0	0	0	0	1	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0034	5346	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0035	5346	1	0	0	0	0	1	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0036	5346	1	0	0	0	1	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0037	5346	1	1	0	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0038	5346	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0039	5352	1	0	0	0	0	1	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1L3_chr19_37902208_38213369	0/0	c0040	5352	1	0	1	0	0	0	copy fasta	SIPA1L3	chr19	37902208	38213369
SIPA1_chr11_65633101_65655912	0/1	c0001	3129	184	38	42	85	7	11	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0002	3129	76	18	9	40	1	8	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0003	3129	64	6	14	31	6	7	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0004	3129	40	15	2	14	3	6	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0005	3129	8	7	1	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0006	3129	6	5	1	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0007	3129	6	0	0	6	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	1/0	c0008	3129	2	1	0	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0009	3129	2	2	0	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0010	3129	2	0	0	2	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0011	3129	1	0	1	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0012	3129	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0013	3129	1	0	0	0	0	1	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0014	3129	1	0	0	0	0	1	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0015	3129	1	1	0	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0016	3129	1	0	0	0	1	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0017	3129	1	1	0	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0018	3129	1	0	1	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0019	3129	1	1	0	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0020	3129	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0021	3129	1	1	0	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0022	3129	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0023	3129	1	0	1	0	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0024	3119	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0025	3129	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIPA1_chr11_65633101_65655912	0/0	c0026	3129	1	0	0	1	0	0	copy fasta	SIPA1	chr11	65633101	65655912
SIRPA_chr20_1890407_1945592	1/0	c0001	1515	203	59	46	67	11	19	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/1	c0002	1512	195	30	30	111	7	16	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0003	1515	5	4	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0004	1515	2	0	0	2	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0005	1515	2	2	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0006	1512	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0007	1512	1	1	0	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0008	1512	1	0	1	0	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0009	1512	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0010	1512	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592