JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIRPA_chr20_1890407_1945592	0/0	c0011	1512	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0012	1515	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0013	1515	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0014	1515	1	0	0	0	0	1	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0015	1515	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPA_chr20_1890407_1945592	0/0	c0016	1515	1	0	0	1	0	0	copy fasta	SIRPA	chr20	1890407	1945592
SIRPB1_chr20_1556385_1625009	0/1	c0001	1197	122	47	24	27	4	19	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0002	1197	109	13	16	60	1	19	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0003	1197	72	4	20	40	3	5	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0004	840	16	6	3	0	4	3	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0005	1197	9	0	0	9	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0006	1197	4	3	1	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0007	1197	3	0	3	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	1/0	c0008	1197	3	1	0	1	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0009	1197	3	3	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0010	1197	3	1	0	2	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0011	1197	2	0	0	0	0	2	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0012	1197	2	2	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0013	1197	2	2	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0014	1197	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0015	1197	1	0	0	1	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0016	1197	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0017	1197	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0018	1197	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0019	1197	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0020	1197	1	0	0	0	0	1	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0021	1197	1	0	0	1	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0022	1197	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0023	1197	1	0	1	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0024	840	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0025	1197	1	0	0	0	0	1	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0026	1197	1	1	0	0	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB1_chr20_1556385_1625009	0/0	c0027	1197	1	0	0	1	0	0	copy fasta	SIRPB1	chr20	1556385	1625009
SIRPB2_chr20_1469578_1496420	0/0	c0001	1029	325	72	58	146	8	41	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	c0002	1029	19	15	4	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	1/0	c0003	1029	13	1	3	1	4	3	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/1	c0004	1029	7	1	2	3	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	c0005	1029	2	0	0	2	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	c0006	1029	1	0	0	1	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	c0007	1029	1	0	1	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	c0008	1029	1	0	0	1	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	c0009	1029	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	c0010	1029	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	c0011	1029	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPD_chr20_1529251_1562705	0/1	c0001	594	252	72	36	113	5	25	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	1/0	c0002	594	83	7	18	53	1	3	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	c0003	594	25	2	10	2	0	11	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	c0004	594	25	8	6	0	6	5	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	c0005	594	1	0	0	1	0	0	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	c0006	594	1	0	0	1	0	0	copy fasta	SIRPD	chr20	1529251	1562705