JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIRT6_chr19_4169109_4187563	0/1	c0001	1068	312	81	52	124	18	36	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	1/0	c0002	1068	82	8	18	45	0	10	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0003	1068	3	3	0	0	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0004	1068	3	0	0	3	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0005	1068	1	1	0	0	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0006	1068	1	0	0	1	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0007	1068	1	0	0	1	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0008	1068	1	0	1	0	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0009	1068	1	1	0	0	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0010	1068	1	0	0	0	0	1	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0011	1068	1	0	0	1	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0012	1068	1	0	0	0	0	1	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0013	1068	1	0	0	1	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT6_chr19_4169109_4187563	0/0	c0014	1068	1	0	1	0	0	0	copy fasta	SIRT6	chr19	4169109	4187563
SIRT7_chr17_81906939_81923176	0/1	c0001	1203	311	59	55	153	8	35	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	c0002	1203	16	15	1	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	1/0	c0003	1203	5	2	2	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	c0004	1203	2	0	0	2	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	c0005	1203	2	2	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	c0006	1203	1	0	0	0	0	1	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	c0007	1203	1	1	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	c0008	1203	1	1	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	c0009	1203	1	1	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	c0010	1203	1	0	0	1	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIRT7_chr17_81906939_81923176	0/0	c0011	1203	1	1	0	0	0	0	copy fasta	SIRT7	chr17	81906939	81923176
SIT1_chr9_35644295_35655931	1/1	c0001	591	428	94	74	194	15	49	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	c0002	591	1	0	0	0	0	1	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	c0003	591	1	1	0	0	0	0	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	c0004	591	1	1	0	0	0	0	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	c0005	591	1	0	0	1	0	0	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	c0006	591	1	0	0	0	1	0	copy fasta	SIT1	chr9	35644295	35655931
SIT1_chr9_35644295_35655931	0/0	c0007	591	1	0	0	1	0	0	copy fasta	SIT1	chr9	35644295	35655931
SIVA1_chr14_104748147_104764654	1/1	c0001	528	234	72	45	82	11	22	copy fasta	SIVA1	chr14	104748147	104764654
SIVA1_chr14_104748147_104764654	0/0	c0002	528	176	15	39	101	3	18	copy fasta	SIVA1	chr14	104748147	104764654
SIVA1_chr14_104748147_104764654	0/0	c0003	528	4	4	0	0	0	0	copy fasta	SIVA1	chr14	104748147	104764654
SIVA1_chr14_104748147_104764654	0/0	c0004	528	3	3	0	0	0	0	copy fasta	SIVA1	chr14	104748147	104764654
SIVA1_chr14_104748147_104764654	0/0	c0005	528	1	0	0	1	0	0	copy fasta	SIVA1	chr14	104748147	104764654
SIX1_chr14_60638421_60654477	1/1	c0001	855	389	79	62	184	14	48	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	c0002	855	1	0	1	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	c0003	855	1	1	0	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX1_chr14_60638421_60654477	0/0	c0004	855	1	0	1	0	0	0	copy fasta	SIX1	chr14	60638421	60654477
SIX2_chr2_45000182_45014452	0/0	c0001	876	429	94	84	193	18	40	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	c0002	876	5	0	0	5	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	c0003	876	1	1	0	0	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	c0004	876	1	1	0	0	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	c0005	876	1	0	0	1	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX2_chr2_45000182_45014452	0/0	c0006	876	1	0	0	1	0	0	copy fasta	SIX2	chr2	45000182	45014452
SIX3_chr2_44936702_44951071	0/1	c0001	999	403	91	65	192	15	39	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	c0002	999	15	1	4	7	1	2	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	1/0	c0003	999	14	0	6	3	0	4	copy fasta	SIX3	chr2	44936702	44951071