JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SKA3_chr13_21148595_21181552	0/0	c0010	1781	2	0	2	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0011	1781	2	0	0	2	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0012	1781	1	0	0	1	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0013	1780	1	0	0	0	0	1	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0014	1781	1	0	0	0	0	1	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0015	1781	1	0	0	0	0	1	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0016	1780	1	1	0	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0017	1780	1	0	1	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKAP1_chr17_48128442_48435214	0/1	c0001	1080	140	29	24	68	5	13	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	1/0	c0002	1080	97	42	14	29	4	7	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	c0003	1080	24	3	3	15	0	3	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	c0004	1080	15	7	6	0	1	1	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	c0005	1080	13	0	11	2	0	0	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	c0006	1080	2	2	0	0	0	0	copy fasta	SKAP1	chr17	48128442	48435214
SKAP1_chr17_48128442_48435214	0/0	c0007	1080	1	1	0	0	0	0	copy fasta	SKAP1	chr17	48128442	48435214
SKAP2_chr7_26662068_26869590	1/1	c0001	1080	239	40	34	133	10	20	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	c0002	1080	39	24	12	1	0	2	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	c0003	1080	9	8	1	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	c0004	1080	8	7	1	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKAP2_chr7_26662068_26869590	0/0	c0005	1080	1	1	0	0	0	0	copy fasta	SKAP2	chr7	26662068	26869590
SKIC2_chr6_31954175_31974751	0/1	c0001	3741	167	38	36	58	9	25	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0002	3741	74	5	12	53	2	2	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0003	3741	39	21	8	8	0	2	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0004	3741	30	12	3	9	0	6	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0005	3741	27	0	9	18	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0006	3741	16	0	3	11	1	1	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0007	3741	15	2	0	13	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0008	3741	13	0	0	13	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0009	3741	13	0	0	13	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0010	3741	8	0	0	2	1	5	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0011	3741	7	1	1	5	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0012	3741	6	1	3	0	2	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0013	3741	5	4	1	0	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0014	3741	4	4	0	0	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0015	3741	4	3	0	0	1	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0016	3741	3	0	3	0	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0017	3741	3	0	0	3	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0018	3741	3	0	0	3	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0019	3741	3	1	2	0	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0020	3741	2	0	0	0	2	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0021	3741	1	0	0	0	0	1	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0022	3741	1	0	0	1	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0023	3741	1	0	0	0	0	1	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0024	3741	1	0	0	1	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0025	3741	1	0	0	1	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0026	3741	1	1	0	0	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0027	3741	1	0	0	1	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0028	3741	1	1	0	0	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0029	3741	1	0	0	0	0	1	copy fasta	SKIC2	chr6	31954175	31974751
SKIC2_chr6_31954175_31974751	0/0	c0030	3741	1	0	0	1	0	0	copy fasta	SKIC2	chr6	31954175	31974751