JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP2A1_chr16_28873488_28909466	1/0	c0001	2985	234	33	33	122	9	36	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/1	c0002	2985	112	46	23	35	3	4	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0003	2985	20	1	0	19	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0004	2985	2	2	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0005	2985	2	2	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0006	2985	1	1	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0007	2985	1	1	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0008	2985	1	1	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0009	2985	1	0	0	0	0	1	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0010	2985	1	0	0	1	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0011	2985	1	0	0	0	0	1	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0012	2947	1	0	0	1	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0013	2985	1	0	0	1	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0014	2985	1	1	0	0	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A1_chr16_28873488_28909466	0/0	c0015	2985	1	0	0	1	0	0	copy fasta	ATP2A1	chr16	28873488	28909466
ATP2A2_chr12_110276247_110356093	1/1	c0001	3129	211	82	58	33	13	23	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	c0002	3129	4	0	1	0	3	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	c0003	3129	4	4	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	c0004	3129	2	0	0	0	0	2	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	c0005	3129	2	0	2	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	c0006	3129	1	0	0	1	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	c0007	3129	1	1	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	c0008	3129	1	1	0	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	c0009	3129	1	0	1	0	0	0	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A2_chr12_110276247_110356093	0/0	c0010	3129	1	0	0	0	0	1	copy fasta	ATP2A2	chr12	110276247	110356093
ATP2A3_chr17_3918873_3969437	1/1	c0001	3000	142	29	30	59	5	17	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0002	3000	31	5	12	5	3	6	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0003	3000	30	4	6	17	0	3	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0004	3000	20	7	1	7	2	3	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0005	3000	17	3	11	0	1	2	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0006	3000	12	11	1	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0007	3000	11	2	7	0	1	1	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0008	3000	8	1	0	4	0	3	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0009	3000	7	0	2	4	0	1	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0010	3000	5	3	0	0	0	2	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0011	3000	5	0	0	4	1	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0012	3000	3	2	1	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0013	3000	3	3	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0014	3000	2	0	2	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0015	3000	2	2	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0016	3000	2	2	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0017	3000	2	0	0	2	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0018	3000	2	0	1	0	1	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0019	3000	2	0	2	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0020	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0021	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0022	3000	1	0	1	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0023	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0024	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0025	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437