JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SKIC2_chr6_31954175_31974751	0/0	c0031	3741	1	0	1	0	0	0	copy fasta	SKIC2	chr6	31954175	31974751
SKIC3_chr5_95458894_95559977	1/0	c0001	4695	230	37	44	114	10	24	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/1	c0002	4695	74	26	11	29	3	4	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0003	4695	7	1	0	0	1	5	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0004	4695	6	6	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0005	4695	3	0	0	3	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0006	4695	3	3	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0007	4695	3	1	0	2	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0008	4695	2	0	0	2	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0009	4695	2	0	0	0	0	2	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0010	4695	2	0	0	2	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0011	4695	2	0	0	2	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0012	4695	2	0	0	2	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0013	4695	2	0	2	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0014	4695	2	1	1	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0015	4695	1	1	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0016	4695	1	0	0	1	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0017	4695	1	0	0	1	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0018	4695	1	0	1	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0019	4695	1	0	0	0	0	1	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0020	4695	1	0	0	1	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0021	4695	1	0	0	1	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0022	4695	1	0	1	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0023	4695	1	1	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0024	4695	1	1	0	0	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0025	4695	1	0	0	1	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC3_chr5_95458894_95559977	0/0	c0026	4695	1	0	0	1	0	0	copy fasta	SKIC3	chr5	95458894	95559977
SKIC8_chr15_78278235_78304609	1/1	c0001	918	382	91	62	171	15	41	copy fasta	SKIC8	chr15	78278235	78304609
SKIC8_chr15_78278235_78304609	0/0	c0002	918	49	5	12	24	1	7	copy fasta	SKIC8	chr15	78278235	78304609
SKIC8_chr15_78278235_78304609	0/0	c0003	918	1	0	0	1	0	0	copy fasta	SKIC8	chr15	78278235	78304609
SKIC8_chr15_78278235_78304609	0/0	c0004	918	1	0	0	1	0	0	copy fasta	SKIC8	chr15	78278235	78304609
SKIC8_chr15_78278235_78304609	0/0	c0005	918	1	0	0	1	0	0	copy fasta	SKIC8	chr15	78278235	78304609
SKIC8_chr15_78278235_78304609	0/0	c0006	918	1	0	0	1	0	0	copy fasta	SKIC8	chr15	78278235	78304609
SKIC8_chr15_78278235_78304609	0/0	c0007	918	1	0	0	1	0	0	copy fasta	SKIC8	chr15	78278235	78304609
SKIDA1_chr10_21508475_21530682	0/1	c0001	2733	118	52	23	22	9	11	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	1/0	c0002	2727	62	4	22	21	3	11	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0003	2733	15	14	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0004	2733	7	0	0	7	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0005	2733	5	5	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0006	2733	5	4	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0007	2733	3	3	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0008	2727	2	1	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0009	2727	2	0	0	2	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0010	2730	2	2	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0011	2727	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0012	2727	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0013	2733	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0014	2733	1	1	0	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0015	2733	1	0	0	0	0	1	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0016	2733	1	0	0	0	0	1	copy fasta	SKIDA1	chr10	21508475	21530682