JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SKIDA1_chr10_21508475_21530682	0/0	c0017	2727	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0018	2727	1	0	0	1	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIDA1_chr10_21508475_21530682	0/0	c0019	2733	1	0	1	0	0	0	copy fasta	SKIDA1	chr10	21508475	21530682
SKIL_chr3_170352715_170401835	0/1	c0001	2055	221	34	52	103	7	24	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	1/0	c0002	2055	116	55	17	33	1	9	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0003	2055	12	0	0	12	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0004	2055	2	0	0	0	0	2	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0005	2055	2	0	2	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0006	2055	2	0	0	2	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0007	2055	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0008	2055	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0009	2055	1	1	0	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0010	2055	1	0	1	0	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0011	2055	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0012	2055	1	0	0	1	0	0	copy fasta	SKIL	chr3	170352715	170401835
SKIL_chr3_170352715_170401835	0/0	c0013	2055	1	0	0	0	0	1	copy fasta	SKIL	chr3	170352715	170401835
SKI_chr1_2223319_2315213	1/1	c0001	2187	300	71	50	123	13	41	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0002	2187	9	4	4	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0003	2187	7	7	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0004	2187	3	1	1	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0005	2187	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0006	2187	1	1	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0007	2187	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0008	2187	1	0	1	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0009	2187	1	0	0	1	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0010	2187	1	1	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0011	2187	1	1	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0012	2187	1	1	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0013	2169	1	0	0	0	0	1	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0014	2187	1	1	0	0	0	0	copy fasta	SKI	chr1	2223319	2315213
SKI_chr1_2223319_2315213	0/0	c0015	2187	1	0	0	0	1	0	copy fasta	SKI	chr1	2223319	2315213
SKOR1_chr15_67820509_67839582	1/0	c0001	2898	310	72	43	158	7	29	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0002	2898	46	10	20	1	3	12	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/1	c0003	2898	45	2	9	28	3	2	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0004	2859	11	0	6	4	1	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0005	2898	4	4	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0006	2898	2	2	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0007	2898	2	2	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0008	2898	1	1	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0009	2898	1	1	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0010	2875	1	0	1	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0011	2898	1	0	0	0	0	1	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0012	2898	1	1	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0013	2898	1	1	0	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0014	2859	1	0	1	0	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR1_chr15_67820509_67839582	0/0	c0015	2898	1	0	0	1	0	0	copy fasta	SKOR1	chr15	67820509	67839582
SKOR2_chr18_47201169_47256660	1/0	c0001	3048	175	47	24	79	6	18	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/1	c0002	3048	127	25	26	64	7	4	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0003	3048	7	7	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0004	3048	5	0	0	0	0	5	copy fasta	SKOR2	chr18	47201169	47256660