JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SKOR2_chr18_47201169_47256660	0/0	c0005	3051	4	4	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0006	3048	3	0	1	0	1	1	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0007	3051	3	0	0	3	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0008	3048	2	0	0	0	0	2	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0009	3048	2	0	0	2	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0010	3051	2	2	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0011	3048	2	2	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0012	3048	1	0	0	1	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0013	3048	1	1	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0014	3048	1	0	0	1	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0015	3048	1	1	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0016	3048	1	1	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0017	3048	1	0	0	1	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0018	3048	1	1	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0019	3048	1	0	1	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0020	3048	1	0	0	1	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0021	3048	1	0	1	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0022	3048	1	0	1	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKOR2_chr18_47201169_47256660	0/0	c0023	3048	1	1	0	0	0	0	copy fasta	SKOR2	chr18	47201169	47256660
SKP1_chr5_134143935_134181950	1/1	c0001	492	360	86	58	160	12	42	copy fasta	SKP1	chr5	134143935	134181950
SKP2_chr5_36147111_36189319	1/1	c0001	1275	360	92	63	154	7	42	copy fasta	SKP2	chr5	36147111	36189319
SKP2_chr5_36147111_36189319	0/0	c0002	1275	42	0	7	34	1	0	copy fasta	SKP2	chr5	36147111	36189319
SLA2_chr20_36607318_36651196	1/1	c0001	786	345	86	74	128	14	41	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	c0002	786	9	9	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	c0003	786	2	2	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	c0004	786	1	0	0	1	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	c0005	786	1	1	0	0	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	c0006	786	1	0	0	1	0	0	copy fasta	SLA2	chr20	36607318	36651196
SLA2_chr20_36607318_36651196	0/0	c0007	786	1	0	0	0	0	1	copy fasta	SLA2	chr20	36607318	36651196
SLAIN1_chr13_77692687_77769229	0/1	c0001	1776	285	70	56	108	14	36	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	c0002	1779	8	7	0	1	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	c0003	1776	3	3	0	0	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	c0004	1776	2	0	2	0	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	1/0	c0005	1773	1	0	0	0	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN1_chr13_77692687_77769229	0/0	c0006	1776	1	0	0	1	0	0	copy fasta	SLAIN1	chr13	77692687	77769229
SLAIN2_chr4_48336529_48431201	1/1	c0001	1746	312	64	56	138	16	36	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	c0002	1746	15	4	4	1	2	4	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	c0003	1746	11	11	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	c0004	1746	3	3	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	c0005	1728	1	0	1	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	c0006	1746	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	c0007	1746	1	0	1	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	c0008	1746	1	1	0	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	c0009	1746	1	0	1	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	c0010	1746	1	0	1	0	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAIN2_chr4_48336529_48431201	0/0	c0011	1746	1	0	0	1	0	0	copy fasta	SLAIN2	chr4	48336529	48431201
SLAMF1_chr1_160603106_160652044	1/0	c0001	1008	353	89	53	168	9	33	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	c0002	1008	32	1	18	9	1	3	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/1	c0003	1008	12	0	3	4	1	3	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	c0004	1008	7	1	1	4	0	1	copy fasta	SLAMF1	chr1	160603106	160652044