JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLAMF1_chr1_160603106_160652044	0/0	c0005	1008	3	0	2	0	1	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	c0006	1008	3	3	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	c0007	1008	2	0	0	0	0	2	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	c0008	1008	2	2	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	c0009	1008	2	2	0	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	c0010	1008	1	0	1	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	c0011	1008	1	0	1	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	c0012	1008	1	0	1	0	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF1_chr1_160603106_160652044	0/0	c0013	1008	1	0	0	1	0	0	copy fasta	SLAMF1	chr1	160603106	160652044
SLAMF6_chr1_160480036_160528255	1/1	c0001	999	362	85	64	157	14	40	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	c0002	999	26	3	9	13	0	1	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	c0003	999	2	1	0	0	0	1	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	c0004	999	2	2	0	0	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	c0005	999	1	1	0	0	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF6_chr1_160480036_160528255	0/0	c0006	999	1	0	1	0	0	0	copy fasta	SLAMF6	chr1	160480036	160528255
SLAMF7_chr1_160734247_160759821	1/1	c0001	1008	371	72	75	177	14	31	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0002	1008	21	0	2	13	0	6	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0003	1008	15	15	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0004	1008	14	0	0	14	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0005	1008	5	0	0	0	0	5	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0006	1008	4	3	1	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0007	1008	4	0	0	4	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0008	1008	2	2	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0009	1008	1	0	0	0	0	1	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0010	1008	1	0	0	0	0	1	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0011	1008	1	1	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF7_chr1_160734247_160759821	0/0	c0012	1008	1	1	0	0	0	0	copy fasta	SLAMF7	chr1	160734247	160759821
SLAMF8_chr1_159821873_159842492	1/1	c0001	858	407	88	79	189	15	34	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0002	858	36	0	3	20	0	13	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0003	858	7	7	0	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0004	858	5	0	0	4	0	1	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0005	858	4	0	3	0	1	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0006	858	4	0	0	4	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0007	858	3	0	0	3	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0008	858	2	2	0	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0009	858	1	0	0	0	0	1	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0010	858	1	0	0	0	0	1	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0011	858	1	1	0	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0012	858	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0013	858	1	0	1	0	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0014	858	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0015	858	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF8_chr1_159821873_159842492	0/0	c0016	858	1	0	0	1	0	0	copy fasta	SLAMF8	chr1	159821873	159842492
SLAMF9_chr1_159946492_159959237	0/0	c0001	870	300	52	61	143	14	30	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0002	870	33	23	4	0	1	5	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0003	870	16	0	4	4	0	8	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0004	870	6	6	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0005	870	6	0	6	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0006	870	5	0	4	0	0	1	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0007	870	3	3	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237