JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLAMF9_chr1_159946492_159959237	0/0	c0008	870	3	3	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0009	870	2	2	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0010	870	2	2	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0011	870	2	2	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0012	870	1	1	0	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0013	870	1	0	0	1	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0014	870	1	0	1	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0015	870	1	0	1	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0016	870	1	0	1	0	0	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLAMF9_chr1_159946492_159959237	0/0	c0017	870	1	0	0	0	1	0	copy fasta	SLAMF9	chr1	159946492	159959237
SLA_chr8_133031728_133107602	1/1	c0001	831	320	78	67	120	12	41	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	c0002	831	17	16	1	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	c0003	831	4	0	0	4	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	c0004	831	2	2	0	0	0	0	copy fasta	SLA	chr8	133031728	133107602
SLA_chr8_133031728_133107602	0/0	c0005	831	1	0	0	0	0	1	copy fasta	SLA	chr8	133031728	133107602
SLBP_chr4_1687731_1717319	1/0	c0001	813	222	75	42	66	11	27	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/1	c0002	813	153	15	35	78	5	19	copy fasta	SLBP	chr4	1687731	1717319
SLBP_chr4_1687731_1717319	0/0	c0003	813	1	0	1	0	0	0	copy fasta	SLBP	chr4	1687731	1717319
SLC10A1_chr14_69770416_69802241	1/1	c0001	1050	263	79	61	91	7	23	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	c0002	1050	52	2	9	32	0	9	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	c0003	1050	7	6	1	0	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	c0004	1050	6	5	1	0	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	c0005	1050	4	0	0	4	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	c0006	1050	2	2	0	0	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	c0007	1050	2	2	0	0	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	c0008	1050	2	0	0	0	0	2	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	c0009	1050	1	0	0	1	0	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A1_chr14_69770416_69802241	0/0	c0010	1050	1	0	0	0	1	0	copy fasta	SLC10A1	chr14	69770416	69802241
SLC10A2_chr13_103038998_103071417	0/0	c0001	1047	311	70	54	145	10	32	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	1/0	c0002	1047	82	5	13	52	4	7	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/1	c0003	1047	9	2	5	1	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0004	1047	7	6	1	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0005	1047	4	0	3	0	0	1	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0006	1047	4	3	1	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0007	1047	3	3	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0008	1047	1	0	0	1	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0009	1047	1	0	1	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0010	1047	1	1	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0011	1047	1	0	1	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0012	1047	1	1	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0013	1047	1	1	0	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0014	1047	1	0	0	1	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A2_chr13_103038998_103071417	0/0	c0015	1047	1	0	1	0	0	0	copy fasta	SLC10A2	chr13	103038998	103071417
SLC10A3_chrX_154482311_154495629	1/1	c0001	1434	290	60	59	122	13	34	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	c0002	1434	15	14	1	0	0	0	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	c0003	1434	3	2	1	0	0	0	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	c0004	1435	1	0	0	1	0	0	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	c0005	1434	1	0	1	0	0	0	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	c0006	1434	1	1	0	0	0	0	copy fasta	SLC10A3	chrX	154482311	154495629
SLC10A3_chrX_154482311_154495629	0/0	c0007	1434	1	1	0	0	0	0	copy fasta	SLC10A3	chrX	154482311	154495629