JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC10A4_chr4_48478343_48494526	1/1	c0001	1314	378	91	67	162	16	40	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	c0002	1314	5	4	1	0	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	c0003	1314	3	0	0	3	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	c0004	1314	2	0	0	0	0	2	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	c0005	1314	2	0	0	2	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	c0006	1314	1	1	0	0	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A4_chr4_48478343_48494526	0/0	c0007	1314	1	0	0	1	0	0	copy fasta	SLC10A4	chr4	48478343	48494526
SLC10A5_chr8_81688631_81700058	1/0	c0001	1317	205	30	18	143	4	9	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/1	c0002	1317	131	26	43	33	9	19	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0003	1317	36	6	3	22	0	5	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0004	1317	16	15	1	0	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0005	1317	15	7	3	0	1	4	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0006	1317	8	8	0	0	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0007	1317	4	4	0	0	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0008	1317	4	0	0	4	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0009	1317	1	0	0	0	0	1	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0010	1287	1	0	0	1	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0011	1317	1	1	0	0	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0012	1317	1	1	0	0	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0013	1317	1	0	0	1	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0014	1317	1	0	0	1	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A5_chr8_81688631_81700058	0/0	c0015	1317	1	0	0	1	0	0	copy fasta	SLC10A5	chr8	81688631	81700058
SLC10A6_chr4_86818468_86854384	1/0	c0001	1134	302	78	47	143	14	19	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/1	c0002	1134	24	7	10	1	1	4	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0003	1134	4	4	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0004	1134	4	0	1	3	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0005	1134	4	0	3	0	1	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0006	1134	3	3	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0007	1134	2	2	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0008	1134	1	1	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0009	1134	1	1	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0010	1134	1	1	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0011	1134	1	1	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0012	1134	1	0	1	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0013	1134	1	0	0	0	0	1	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	c0014	1134	1	0	0	1	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A7_chr4_146248981_146526940	1/1	c0001	1023	236	63	37	103	8	23	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	c0002	1023	5	0	2	2	0	1	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	c0003	1023	1	0	1	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	c0004	1023	1	0	0	1	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	c0005	1023	1	1	0	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC11A1_chr2_218377273_218401894	0/1	c0001	1653	187	26	41	75	14	30	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0002	1653	41	9	12	15	2	3	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0003	1653	38	27	1	4	0	6	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0004	1653	23	19	3	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0005	1653	18	2	1	9	0	6	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0006	1653	14	0	3	10	0	1	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	1/0	c0007	1653	9	8	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0008	1653	7	1	6	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0009	1654	5	0	2	2	0	1	copy fasta	SLC11A1	chr2	218377273	218401894