JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC11A1_chr2_218377273_218401894	0/0	c0010	1653	5	0	0	5	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0011	1653	4	0	0	4	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0012	1653	3	1	1	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0013	1654	3	1	0	2	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0014	1653	2	0	0	2	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0015	1654	2	0	0	2	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0016	1653	2	0	0	2	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0017	1653	1	0	0	0	0	1	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0018	1653	1	0	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0019	1653	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0020	1653	1	0	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0021	1653	1	0	0	0	0	1	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0022	1653	1	0	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0023	1653	1	0	1	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0024	1654	1	0	1	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0025	1653	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0026	1653	1	0	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0027	1653	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0028	1653	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	c0029	1653	1	0	0	0	0	1	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A2_chr12_50980992_51031384	1/1	c0001	1686	312	74	61	132	11	32	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0002	1686	41	3	11	18	3	6	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0003	1686	7	0	0	7	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0004	1686	2	2	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0005	1686	1	1	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0006	1686	1	1	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0007	1686	1	0	1	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0008	1686	1	0	0	0	0	1	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0009	1686	1	1	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0010	1686	1	0	1	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0011	1686	1	0	0	0	0	1	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	c0012	1686	1	0	0	1	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC12A1_chr15_48201302_48309078	0/0	c0001	3300	160	58	18	78	0	6	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/1	c0002	3300	74	15	15	36	0	7	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0003	3300	7	0	0	7	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0004	3300	6	0	0	6	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0005	3300	6	0	2	4	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0006	3300	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0007	3300	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0008	3300	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0009	3300	1	0	0	1	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0010	3300	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0011	3300	1	0	0	1	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0012	3300	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0013	3300	1	0	0	0	0	1	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0014	3300	1	0	1	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	1/0	c0015	3300	1	0	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0016	3300	1	0	1	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0017	3300	1	0	1	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	c0018	3300	1	0	0	1	0	0	copy fasta	SLC12A1	chr15	48201302	48309078