JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC12A3_chr16_56860207_56920850	0/0	c0035	3066	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0036	3066	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0037	3066	1	0	0	0	1	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0038	3066	1	0	1	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0039	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0040	3066	1	0	1	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0041	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0042	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0043	3066	1	0	0	0	0	1	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0044	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0045	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0046	3066	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0047	3066	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0048	3066	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0049	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0050	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0051	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0052	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0053	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0054	3066	1	0	0	0	0	1	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0055	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0056	3066	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0057	3066	1	0	1	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A4_chr16_67938474_67973637	1/1	c0001	3258	217	46	49	77	9	34	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0002	3258	29	23	4	1	1	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0003	3258	9	8	0	0	0	1	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0004	3258	4	4	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0005	3258	3	3	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0006	3258	3	3	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0007	3258	3	3	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0008	3258	2	1	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0009	3258	1	0	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0010	3258	1	0	0	0	0	1	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0011	3258	1	0	1	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0012	3258	1	0	0	0	0	1	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0013	3258	1	0	0	0	0	1	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0014	3258	1	0	0	1	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0015	3258	1	0	0	1	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0016	3258	1	1	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0017	3258	1	1	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A4_chr16_67938474_67973637	0/0	c0018	3258	1	1	0	0	0	0	copy fasta	SLC12A4	chr16	67938474	67973637
SLC12A5_chr20_46024215_46065150	0/0	c0001	3351	240	67	35	105	5	28	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0002	3351	81	1	9	56	7	8	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0003	3351	23	9	3	2	3	6	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0004	3351	13	0	7	2	2	2	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0005	3351	11	0	0	11	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0006	3351	10	2	5	0	1	2	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0007	3351	5	2	3	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0008	3351	4	0	0	4	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	1/0	c0009	3351	4	3	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150