JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC12A5_chr20_46024215_46065150	0/0	c0010	3351	3	1	2	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0011	3351	2	0	0	2	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0012	3351	1	0	1	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/1	c0013	3351	1	0	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0014	3351	1	0	0	0	0	1	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0015	3351	1	0	1	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0016	3351	1	0	0	1	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0017	3351	1	1	0	0	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0018	3351	1	0	0	1	0	0	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A5_chr20_46024215_46065150	0/0	c0019	3351	1	0	0	0	0	1	copy fasta	SLC12A5	chr20	46024215	46065150
SLC12A6_chr15_34224784_34342781	0/1	c0001	3453	112	29	21	46	3	12	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0002	3453	54	8	4	37	1	4	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	1/0	c0003	3453	33	26	5	0	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0004	3453	33	11	8	6	0	8	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0005	3453	16	6	5	3	0	2	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0006	3453	5	0	1	4	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0007	3453	4	4	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0008	3453	4	0	1	2	0	1	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0009	3453	3	3	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0010	3453	2	0	0	2	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0011	3453	2	0	0	2	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0012	3453	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0013	3453	1	0	0	1	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0014	3453	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0015	3453	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0016	3453	1	1	0	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A6_chr15_34224784_34342781	0/0	c0017	3453	1	0	1	0	0	0	copy fasta	SLC12A6	chr15	34224784	34342781
SLC12A7_chr5_1045384_1117063	0/0	c0001	3252	26	1	6	8	2	9	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0002	3252	12	1	1	8	1	1	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0003	3252	8	8	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0004	3252	6	0	1	1	1	3	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0005	3252	5	2	0	3	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0006	3252	5	3	1	1	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0007	3252	5	5	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0008	3252	4	1	1	1	0	1	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0009	3252	4	3	0	1	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0010	3252	4	4	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0011	3252	3	0	0	2	0	1	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0012	3252	3	3	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0013	3252	3	0	0	3	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0014	3252	3	2	1	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0015	3252	2	2	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0016	3252	2	1	1	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0017	3252	2	2	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0018	3252	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0019	3252	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0020	3252	1	0	0	1	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0021	3252	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0022	3252	1	0	0	1	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0023	3252	1	0	1	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063