Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABHD15_chr17_29555547_29572037	0/0	c0009	1407	1	1	0	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	c0010	1407	1	0	0	1	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	c0011	1407	1	0	0	1	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	c0012	1407	1	0	1	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD16A_chr6_31681955_31708324	0/1	c0001	1677	289	49	57	142	12	28	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0002	1677	63	30	17	5	3	8	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0003	1677	33	12	5	5	3	8	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0004	1677	13	0	0	13	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0005	1677	11	0	0	11	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0006	1677	2	0	0	0	0	2	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0007	1677	1	0	0	1	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0008	1714	1	0	0	1	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0009	1677	1	0	0	1	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0010	1677	1	1	0	0	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0011	1677	1	0	0	1	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	c0012	1677	1	0	1	0	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16B_chr20_63856498_63867988	1/1	c0001	1410	327	73	71	127	15	39	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0002	1410	27	0	3	19	2	3	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0003	1411	15	2	3	10	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0004	1410	4	4	0	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0005	1410	4	4	0	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0006	1410	4	4	0	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0007	1411	2	0	0	2	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0008	1410	2	1	1	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0009	1433	1	0	0	0	0	1	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0010	1410	1	1	0	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0011	1410	1	0	0	0	0	1	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0012	1410	1	0	0	1	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0013	1410	1	0	0	0	1	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0014	1410	1	1	0	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0015	1410	1	0	0	1	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0016	1411	1	1	0	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0017	1410	1	1	0	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0018	1410	1	0	0	1	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0019	1410	1	0	1	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0020	1410	1	0	0	1	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	c0021	1410	1	0	1	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD17A_chr19_1871810_1890496	1/1	c0001	933	405	87	72	185	14	45	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	c0002	933	5	5	0	0	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	c0003	933	2	0	2	0	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	c0004	933	1	0	0	1	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	c0005	933	1	1	0	0	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	c0006	933	1	0	0	0	0	1	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	c0007	933	1	1	0	0	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17B_chr9_71860152_71916193	1/1	c0001	867	185	61	46	50	12	14	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	c0002	867	1	1	0	0	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17C_chr15_80690310_80760621	0/1	c0001	990	342	77	60	144	14	46	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	1/0	c0002	990	11	10	0	0	0	0	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	c0003	990	4	4	0	0	0	0	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	c0004	990	2	2	0	0	0	0	copy fasta	ABHD17C	chr15	80690310	80760621