JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP2A3_chr17_3918873_3969437	0/0	c0026	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0027	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0028	3000	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0029	3000	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0030	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0031	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0032	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0033	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0034	3000	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0035	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0036	3000	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0037	3000	1	0	0	0	0	1	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0038	3000	1	0	0	0	1	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0039	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0040	3000	1	1	0	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0041	3000	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0042	3000	1	0	0	0	0	1	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0043	3000	1	0	0	0	1	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0044	3000	1	0	0	1	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2A3_chr17_3918873_3969437	0/0	c0045	3000	1	0	1	0	0	0	copy fasta	ATP2A3	chr17	3918873	3969437
ATP2B1_chr12_89583049_89713838	1/0	c0001	3663	285	65	44	126	13	36	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/1	c0002	3663	26	8	11	1	1	4	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	c0003	3663	5	4	1	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	c0004	3663	5	4	1	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	c0005	3663	3	1	2	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	c0006	3663	2	2	0	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	c0007	3663	2	2	0	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	c0008	3663	1	0	0	1	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	c0009	3663	1	0	0	1	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	c0010	3663	1	0	0	1	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B1_chr12_89583049_89713838	0/0	c0011	3663	1	0	1	0	0	0	copy fasta	ATP2B1	chr12	89583049	89713838
ATP2B2_chr3_10319023_10510586	0/0	c0001	3732	55	12	10	20	2	11	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	1/0	c0002	3732	48	14	12	12	3	6	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0003	3732	37	6	9	18	1	3	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0004	3732	32	15	1	12	1	3	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0005	3732	27	0	5	19	1	2	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0006	3732	19	1	10	0	1	7	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0007	3732	10	0	0	7	1	2	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/1	c0008	3732	10	6	1	2	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0009	3732	7	1	1	4	1	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0010	3732	6	6	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0011	3732	5	5	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0012	3732	3	3	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0013	3732	3	0	0	0	1	2	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0014	3732	2	2	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0015	3732	2	0	0	1	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0016	3732	2	1	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0017	3732	2	0	2	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0018	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0019	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586