JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC12A7_chr5_1045384_1117063	0/0	c0024	3252	1	0	1	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0025	3252	1	0	0	0	0	1	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0026	3252	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0027	3252	1	0	1	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0028	3252	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0029	3252	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0030	3252	1	0	0	0	0	1	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0031	3252	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0032	3252	1	0	0	1	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0033	3252	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0034	3252	1	0	1	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0035	3252	1	0	0	0	0	1	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0036	3252	1	0	0	1	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0037	3252	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A7_chr5_1045384_1117063	0/0	c0038	3252	1	1	0	0	0	0	copy fasta	SLC12A7	chr5	1045384	1117063
SLC12A8_chr3_125077644_125217748	0/0	c0001	2145	191	51	37	80	5	18	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/1	c0002	2145	87	3	24	43	2	14	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0003	2145	23	16	3	3	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0004	2145	12	8	0	3	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0005	2145	7	0	2	5	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0006	2145	6	1	3	1	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0007	2145	3	0	2	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0008	2145	3	0	0	3	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0009	2145	3	3	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0010	2145	3	3	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0011	2145	2	0	1	0	1	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0012	2145	2	2	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0013	2145	2	0	0	1	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0014	2145	2	0	1	0	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0015	2145	2	0	2	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0016	2145	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0017	2145	1	0	0	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0018	2145	1	0	0	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0019	2145	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0020	2145	1	0	0	0	0	1	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	1/0	c0021	2145	1	0	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0022	2145	1	0	1	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0023	2145	1	0	0	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0024	2145	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0025	2145	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0026	2145	1	0	0	1	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0027	2145	1	0	1	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0028	2145	1	0	1	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A8_chr3_125077644_125217748	0/0	c0029	2145	1	1	0	0	0	0	copy fasta	SLC12A8	chr3	125077644	125217748
SLC12A9_chr7_100847713_100872010	0/1	c0001	2745	189	30	46	83	8	21	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	1/0	c0002	2745	138	47	20	46	10	14	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0003	2745	46	0	1	38	0	7	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0004	2745	26	0	1	25	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0005	2745	4	0	0	4	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0006	2745	2	2	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010