JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC12A9_chr7_100847713_100872010	0/0	c0007	2745	2	2	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0008	2745	2	2	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0009	2745	1	0	0	1	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0010	2745	1	0	0	0	0	1	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0011	2745	1	0	1	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0012	2745	1	0	0	1	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0013	2745	1	0	0	0	0	1	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0014	2745	1	0	0	1	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0015	2745	1	0	0	1	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0016	2745	1	1	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0017	2745	1	1	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0018	2745	1	1	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0019	2745	1	1	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0020	2745	1	0	1	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0021	2745	1	1	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0022	2745	1	1	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC12A9_chr7_100847713_100872010	0/0	c0023	2745	1	1	0	0	0	0	copy fasta	SLC12A9	chr7	100847713	100872010
SLC13A1_chr7_123108531_123204969	1/1	c0001	1788	256	68	53	107	5	21	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	c0002	1788	83	13	14	45	3	8	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	c0003	1788	3	0	1	0	2	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	c0004	1788	2	2	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	c0005	1788	2	2	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	c0006	1788	1	0	0	0	0	1	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	c0007	1788	1	1	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	c0008	1788	1	1	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A1_chr7_123108531_123204969	0/0	c0009	1788	1	1	0	0	0	0	copy fasta	SLC13A1	chr7	123108531	123204969
SLC13A2_chr17_28468644_28502781	1/1	c0001	1779	166	28	33	73	11	19	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0002	1779	132	32	33	51	4	12	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0003	1779	50	15	9	15	1	10	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0004	1779	9	8	1	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0005	1779	6	0	0	6	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0006	1779	4	4	0	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0007	1779	3	0	3	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0008	1779	3	0	0	3	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0009	1779	3	0	0	2	0	1	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0010	1779	1	0	1	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0011	1779	1	1	0	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0012	1779	1	1	0	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0013	1779	1	1	0	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0014	1779	1	0	0	1	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0015	1779	1	0	0	1	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0016	1779	1	0	0	1	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0017	1779	1	1	0	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0018	1779	1	0	0	1	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0019	1779	1	0	0	1	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0020	1779	1	0	0	1	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A2_chr17_28468644_28502781	0/0	c0021	1779	1	1	0	0	0	0	copy fasta	SLC13A2	chr17	28468644	28502781
SLC13A3_chr20_46552828_46656459	0/0	c0001	1809	128	27	23	59	6	13	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	1/0	c0002	1809	66	12	11	34	1	7	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0003	1809	46	16	7	19	1	3	copy fasta	SLC13A3	chr20	46552828	46656459