JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC13A3_chr20_46552828_46656459	0/0	c0004	1809	46	8	9	16	5	8	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/1	c0005	1809	39	4	8	17	0	9	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0006	1809	23	9	2	8	0	4	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0007	1809	6	1	0	4	0	1	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0008	1809	4	0	0	4	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0009	1809	4	4	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0010	1809	3	0	0	3	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0011	1809	3	2	1	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0012	1809	3	3	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0013	1809	2	0	0	0	2	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0014	1809	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0015	1809	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0016	1809	1	0	1	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0017	1809	1	0	1	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0018	1809	1	0	1	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0019	1809	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0020	1809	1	0	1	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0021	1809	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0022	1809	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0023	1809	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0024	1809	1	0	0	0	1	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0025	1809	1	0	1	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0026	1809	1	0	0	0	0	1	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0027	1809	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0028	1809	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0029	1809	1	1	0	0	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A3_chr20_46552828_46656459	0/0	c0030	1809	1	0	0	1	0	0	copy fasta	SLC13A3	chr20	46552828	46656459
SLC13A4_chr7_135676231_135733186	0/1	c0001	1884	146	27	17	75	8	18	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0002	1884	106	26	23	51	1	5	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	1/0	c0003	1884	81	12	17	30	6	15	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0004	1884	23	15	5	2	0	1	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0005	1884	4	4	0	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0006	1884	3	1	1	0	1	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0007	1884	2	2	0	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0008	1884	1	0	0	0	0	1	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0009	1884	1	0	1	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0010	1884	1	0	1	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0011	1884	1	1	0	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0012	1884	1	0	0	0	0	1	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0013	1884	1	0	0	0	0	1	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A4_chr7_135676231_135733186	0/0	c0014	1884	1	0	1	0	0	0	copy fasta	SLC13A4	chr7	135676231	135733186
SLC13A5_chr17_6679719_6718369	1/1	c0001	1707	423	81	77	209	9	45	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	c0002	1707	12	10	0	1	0	1	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	c0003	1707	8	2	2	0	3	1	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	c0004	1707	3	3	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	c0005	1707	2	0	0	2	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	c0006	1707	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	c0007	1707	1	0	0	1	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	c0008	1707	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	c0009	1707	1	0	1	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369